Detailed information NTG0704790

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: PDI73_RS05760
• Genome accession: NZ_CP115479
• Coordinates: 1218180..1220783 (-)
• Length: 867 a.a.
• NCBI ID: WP_033901016.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain EP2
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1213180..1225783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PDI73_RS05740 (PDI73_05740)	-	1214061..1214591 (+)	531	WP_003130052.1	TetR/AcrR family transcriptional regulator	-
PDI73_RS05745 (PDI73_05745)	-	1214642..1216231 (-)	1590	WP_277730087.1	ABC transporter ATP-binding protein	-
PDI73_RS05750 (PDI73_05750)	purN	1216398..1216946 (-)	549	WP_012898139.1	phosphoribosylglycinamide formyltransferase	-
PDI73_RS05755 (PDI73_05755)	purM	1216975..1217997 (-)	1023	WP_196244833.1	phosphoribosylformylglycinamidine cyclo-ligase	-
PDI73_RS05760 (PDI73_05760)	clpC	1218180..1220783 (-)	2604	WP_033901016.1	ATP-dependent chaperone ClpB	Regulator
PDI73_RS05765 (PDI73_05765)	-	1221017..1222357 (+)	1341	WP_277730088.1	hypothetical protein	-
PDI73_RS05770 (PDI73_05770)	-	1222390..1223013 (-)	624	WP_033901020.1	NAD-dependent epimerase/dehydratase family protein	-
PDI73_RS05775 (PDI73_05775)	purF	1223123..1224622 (-)	1500	WP_058212658.1	amidophosphoribosyltransferase	-
PDI73_RS05780 (PDI73_05780)	-	1224737..1225582 (-)	846	WP_033901025.1	oxidoreductase	-

Sequence

Protein

• Length: 867 a.a.
• Molecular weight: 97245.00 Da
• Isoelectric Point: 4.8176

>NTDB_id=704790 PDI73_RS05760 WP_033901016.1 1218180..1220783(-) (clpC) [Lactococcus lactis strain EP2]
MDIEKMTTTMQEALGSAQQIAQVRHHQVIEVPHLWRIFVQPNSFGANFYKDLGIDLDDFTNLIEKEIDKINSVEGSNITY
GQNLSPDLFQVFTEADKIAQKMGDEYLSTEIILLALFELKQNPLTSYLVSHGLTKAKAQAAIEKLRGGDKVTSQNAEETY
KALEKYGVDLVAQVKSGKQDPVIGRDEEIRDVIRVLSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF
SLDMGALIAGAKYRGEFEERLKAVLNEVKKSDGQIILFIDELHTIVGAGKTEGSMDAGNLLKPMLARGELHLIGATTLDE
YRKYMETDKALERRFQKVLVTEPTVEDTISILRGLKERFEIHHGVTIHDNALVAAATLSNRYITDRFLPDKAIDLVDEAS
ATIRVEMNSLPTELDQANRRLMQLEIEEAALKKERDDASKKRLEIIRGEIAELREENNQLKAQWEAEKKEVGNISEKRNE
LEHARHELEEAQNEGNLEKAAALRYGKIPEIEKELKAIEEKAKSDDLSLVQESVTEEQIAEVVGRMTGIPITKLVEGERE
KLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEY
MEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPDVFNILLQVLDDGRLTDSKGVLVDFKNTVLIMT
SNVGSQYLLDNVGENGEISEETTENVMAQLRAHFKPEFLNRIDDTILFKPLALEDIKNIIVKMTSQLSHRLEEMDVQLEL
SEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIGGKIPPKSKVIVTLVDNKIDFDIQTIAE

Nucleotide

• Length: 2604 bp

>NTDB_id=704790 PDI73_RS05760 WP_033901016.1 1218180..1220783(-) (clpC) [Lactococcus lactis strain EP2]
ATGGACATCGAAAAAATGACAACAACGATGCAAGAAGCACTTGGTTCAGCGCAACAAATTGCGCAAGTTCGTCATCACCA
AGTGATTGAAGTTCCACATTTATGGCGAATTTTTGTTCAACCTAATAGTTTTGGGGCGAACTTTTATAAAGATTTAGGGA
TTGACCTAGATGACTTTACAAATTTAATTGAAAAAGAAATTGACAAAATTAATTCAGTAGAAGGTTCAAATATTACTTAT
GGTCAAAACCTAAGTCCAGATTTGTTCCAAGTATTTACTGAAGCAGACAAAATTGCGCAAAAAATGGGCGATGAATACCT
ATCAACTGAGATTATTCTCCTTGCCCTCTTTGAATTAAAACAAAATCCATTGACCAGTTATTTGGTCAGCCATGGGCTAA
CAAAAGCAAAAGCGCAAGCTGCGATTGAAAAATTACGCGGAGGTGATAAAGTGACCAGTCAAAATGCAGAAGAAACATAT
AAAGCACTTGAAAAATATGGGGTAGATCTCGTTGCTCAAGTTAAATCAGGTAAACAAGATCCTGTCATTGGACGTGATGA
AGAAATTCGTGATGTCATTCGAGTGCTTTCTCGTAAAACAAAAAATAACCCCGTTCTTATTGGTGAACCTGGGGTTGGTA
AAACAGCCATTGTTGAAGGATTGGCACAAAGGATTGTCAGAAAAGACGTTCCTGAAAATCTGAAAGATAAAACAATCTTT
TCACTGGATATGGGTGCCCTGATTGCAGGAGCGAAATATCGTGGTGAATTTGAAGAACGTTTGAAAGCAGTCCTTAATGA
AGTGAAAAAATCAGATGGACAAATTATCCTCTTTATTGATGAACTTCATACGATTGTTGGTGCAGGTAAAACAGAAGGTT
CAATGGACGCTGGGAACCTTTTAAAACCAATGCTTGCACGTGGTGAACTCCATTTGATTGGGGCAACTACCTTGGATGAA
TATCGTAAATACATGGAAACAGATAAAGCACTTGAACGTCGTTTCCAAAAGGTATTGGTTACTGAACCTACTGTTGAAGA
TACAATTTCAATCTTGCGTGGTCTTAAAGAACGTTTTGAAATTCACCATGGAGTGACCATTCATGATAATGCTTTAGTCG
CAGCAGCAACCCTTTCAAATCGTTATATTACTGACCGATTTTTACCAGATAAAGCCATTGACTTGGTTGATGAAGCCAGT
GCAACAATTCGTGTAGAAATGAATTCACTCCCAACTGAACTTGACCAAGCTAATCGTCGCTTGATGCAATTAGAAATTGA
AGAAGCGGCCCTCAAAAAAGAACGAGATGATGCTTCTAAGAAACGTCTTGAAATTATACGTGGTGAAATTGCTGAACTTC
GAGAAGAAAATAATCAACTCAAAGCTCAATGGGAAGCTGAGAAAAAAGAAGTGGGCAATATTTCTGAAAAACGAAATGAA
TTAGAACATGCTCGCCACGAATTGGAAGAAGCTCAAAATGAAGGGAACTTAGAAAAAGCAGCAGCCCTTCGTTATGGTAA
AATTCCTGAAATTGAAAAAGAACTCAAAGCTATTGAAGAAAAAGCAAAATCAGATGATTTATCCTTAGTTCAAGAATCAG
TCACAGAAGAACAAATCGCCGAAGTGGTTGGACGCATGACTGGTATTCCAATTACCAAATTGGTTGAAGGTGAACGTGAA
AAATTACTTCACTTGCCAGAAACACTGCATCAAAGGGTCGTTGGACAAGATGAAGCTGTTGAAGCCGTATCTGATGCCAT
TATTCGTGCGCGTGCAGGAATTCAAGACCCTAATCGTCCACTTGGCTCATTCCTCTTCCTCGGTCCAACTGGGGTAGGTA
AGACGGAGCTTGCGAAAGCTTTGGCTGAAAATCTCTTTGATTCAGAAGAACATATGGTTCGGATTGACATGAGTGAATAT
ATGGAAAAACACTCTGTCTCTCGTTTAGTTGGAGCACCTCCAGGATATGTCGGTTACGATGAAGGAGGCCAATTGACTGA
AGCCGTTCGTCGTAATCCTTATACAATCATCTTGCTTGATGAAATCGAAAAAGCACATCCAGATGTCTTCAATATCTTGT
TGCAAGTTTTGGATGACGGCCGTTTGACTGACTCTAAAGGTGTTCTCGTTGACTTTAAGAACACAGTGTTGATTATGACT
TCAAATGTCGGTTCTCAATATTTGCTTGATAATGTTGGAGAAAATGGTGAAATTTCGGAAGAAACAACTGAAAACGTGAT
GGCTCAACTTCGGGCACATTTCAAACCAGAATTTCTAAATCGAATTGATGATACCATTCTTTTCAAACCATTGGCACTTG
AGGATATTAAGAATATTATCGTTAAAATGACTAGCCAACTTTCACATCGTCTTGAAGAAATGGATGTTCAACTTGAGTTG
AGTGAAGAAGTAAAAGTTTGGATTGCCGAAAATGCTTATGAACCGGCTTATGGTGCACGTCCACTCAAACGTTATTTGAC
AAAAGTCATCGAAAATCCATTAGCTAAGCTGATTATCGGCGGAAAAATTCCACCAAAATCAAAAGTTATTGTAACGCTTG
TAGATAACAAGATTGACTTTGATATTCAAACGATTGCTGAATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (599-764)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (771-851)

• AAA lid domain (AAA_lid_9) (344-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-147)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-67)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-339)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.216	100	0.458
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	40.611	100	0.414