Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   PDI73_RS04115 Genome accession   NZ_CP115479
Coordinates   869610..870665 (-) Length   351 a.a.
NCBI ID   WP_109990937.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 864610..875665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS04100 (PDI73_04100) trmFO 866297..867640 (+) 1344 WP_033899770.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PDI73_RS04105 (PDI73_04105) xerS 867685..868755 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  PDI73_RS04110 (PDI73_04110) - 869239..869526 (-) 288 WP_015426413.1 hypothetical protein -
  PDI73_RS04115 (PDI73_04115) xerS 869610..870665 (-) 1056 WP_109990937.1 tyrosine recombinase XerS Machinery gene
  PDI73_RS04120 (PDI73_04120) - 871390..872211 (-) 822 WP_109990938.1 dihydrodipicolinate synthase family protein -
  PDI73_RS04125 (PDI73_04125) - 872295..873497 (-) 1203 WP_109990939.1 MFS transporter -
  PDI73_RS04130 (PDI73_04130) - 873469..874170 (-) 702 WP_109990940.1 phenylalanine--tRNA ligase beta subunit-related protein -
  PDI73_RS04135 (PDI73_04135) - 874189..874722 (-) 534 WP_109990941.1 GNAT family N-acetyltransferase -
  PDI73_RS04140 (PDI73_04140) - 874723..875178 (-) 456 WP_058208608.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40663.26 Da        Isoelectric Point: 9.3141

>NTDB_id=704785 PDI73_RS04115 WP_109990937.1 869610..870665(-) (xerS) [Lactococcus lactis strain EP2]
MSENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLIDGSITNHNQIKKITLQELENVTKHEL
EDFVLHERLRLESKCGSNTHTSALNRTIAAIKSIYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLHDLNLETGKVNVMRKEGKKDVVP
IAQFSHKYINNYFVTRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALSKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=704785 PDI73_RS04115 WP_109990937.1 869610..870665(-) (xerS) [Lactococcus lactis strain EP2]
ATGTCAGAAAACCATGGTTATCAATACAATGTTAATAAACTAATGCTAGAATTTCCAAATTATGTTAACGAATATATTCA
ATCGAAAAGAGTTGTTCCGCTGAGTGAAGCGTCAATATATGAATATTGCTTAGACTTTAGAAAGTACCTCCAATGGCTCA
TTGATGGTAGTATAACAAATCATAATCAAATCAAAAAAATTACCTTGCAAGAATTGGAAAATGTTACCAAACATGAATTG
GAGGACTTTGTGTTACATGAGAGACTACGTTTGGAATCTAAATGTGGGTCAAATACACATACTTCAGCTTTAAATCGAAC
AATTGCAGCGATTAAGAGCATATATAACTATTTATGTGAGCAAACTGAAGATGAACATGGAAATACATACATGACCAGAA
ATGTCAGTCGTTTAATTCATATCCGAAAAAAAAGCGAGACCTTGCATTACCGTGCGGCTCAACTGGAAGGTAAACTATTC
CTTGGTGACGAAACCAAAGCCTTTTTAGAATTTGTTGAACATAACTATGAAAACTCTATCAGTAACCGTGCGAGAACAAG
TTTTAAGAAAAATAAAATCAGAGATTTAGCTATATTAAGTCTTTTTTTATCTTCTGGATTACGTTGTGCGGAACTTGTAG
GGATCAATCTACACGATTTAAACCTTGAAACTGGGAAAGTAAATGTGATGAGAAAAGAGGGAAAAAAAGACGTTGTCCCG
ATTGCCCAGTTTTCACACAAATATATAAATAATTATTTTGTGACAAGAAGTAGCATAGATACTGAGATACAAGCCTTTTT
CATAACAGATTACGACCAAAAAATAAGAAAAATCTCTAACGCTTCAATAAATAAGCTAGTGGCGAAGTATTCAGAAGCCT
ATAAAGTTCGTGTGACACCTCATACACTAAGACATACATTCGCAACGAGGCTCTATAATGTCAGTCACTCTCAAGTTCTT
GTCAGCAATCAATTAGGGCATTCATCAACTAAACCTACAGAACTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
ATTAAGCAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(178-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.17

100

0.453