Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LZ581_RS08105 Genome accession   NZ_CP100388
Coordinates   1737617..1738243 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. steigerwaltii strain VKH10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732617..1743243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ581_RS08085 (LZ581_08085) - 1733016..1734776 (-) 1761 WP_017384808.1 AAA family ATPase -
  LZ581_RS08090 (LZ581_08090) matP 1734963..1735415 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  LZ581_RS08095 (LZ581_08095) ompA 1735481..1736533 (-) 1053 WP_108376575.1 porin OmpA -
  LZ581_RS08100 (LZ581_08100) sulA 1736890..1737399 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  LZ581_RS08105 (LZ581_08105) sxy/tfoX 1737617..1738243 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  LZ581_RS08110 (LZ581_08110) yccS 1738200..1740362 (-) 2163 WP_015570895.1 YccS family putative transporter -
  LZ581_RS08115 (LZ581_08115) - 1740381..1740827 (-) 447 WP_015570894.1 YccF domain-containing protein -
  LZ581_RS08120 (LZ581_08120) helD 1740950..1743004 (+) 2055 WP_254309701.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=704785 LZ581_RS08105 WP_017384804.1 1737617..1738243(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain VKH10]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=704785 LZ581_RS08105 WP_017384804.1 1737617..1738243(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain VKH10]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGTGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572