Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NHM04_RS08235 Genome accession   NZ_CP100350
Coordinates   1876869..1878242 (-) Length   457 a.a.
NCBI ID   WP_254266498.1    Uniprot ID   A0A9J7ABJ8
Organism   Gilvimarinus sp. DA14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871869..1883242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM04_RS08225 (NHM04_08225) ribF 1872946..1873887 (-) 942 WP_254266496.1 bifunctional riboflavin kinase/FAD synthetase -
  NHM04_RS08230 (NHM04_08230) - 1874083..1876569 (-) 2487 WP_254266497.1 ThuA domain-containing protein -
  NHM04_RS08235 (NHM04_08235) radA 1876869..1878242 (-) 1374 WP_254266498.1 DNA repair protein RadA Machinery gene
  NHM04_RS08240 (NHM04_08240) - 1878255..1878521 (-) 267 WP_254266499.1 YrhK family protein -
  NHM04_RS08245 (NHM04_08245) - 1878652..1879116 (+) 465 WP_254266500.1 hypothetical protein -
  NHM04_RS08250 (NHM04_08250) - 1879126..1879764 (-) 639 WP_254266501.1 hypothetical protein -
  NHM04_RS08255 (NHM04_08255) - 1879833..1881290 (-) 1458 WP_254266502.1 YHYH protein -
  NHM04_RS08260 (NHM04_08260) - 1881415..1882947 (-) 1533 WP_254266503.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48415.69 Da        Isoelectric Point: 6.6557

>NTDB_id=704697 NHM04_RS08235 WP_254266498.1 1876869..1878242(-) (radA) [Gilvimarinus sp. DA14]
MASKQKVAYVCNECGADFSKWQGQCSECGTWNSVVEMKLGPAPKGGARNAQFSGYAGSAGSKVQTLADISLEDLPRLSTG
TGEFDRVLGGGLVPGSVVLIGGHPGAGKSTVLLQTLCKIAEQLSCLYVTGEESLQQVAMRANRLGLPTDKLQMLSETSVE
LIGQAAEQLQPKVMVVDSIQVVHLSDIQSAPGSVSQVREAAAYLTRFAKQTGTVVILVGHVTKDGSLAGPKVLEHMIDCS
ILLEGSHDSRFRTLRGNKNRFGAVNELGVFAMTEKGLKEVSNPSAIFLQRGDEVASGSVVMVMWEGTRPLLVEIQALVDD
SHLGNPRRVAVGLDQNRLSMLLAVLHRHGGVLVGDQDVFVNVVGGVRVAETSADLALVLAIVSSFRDRPLAHDLMVFGEI
GLSGEIRPVPSGQERLREAAKHGFKRAIVPIGNAPKAMDGIEIVAVKSLSEALAAIE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=704697 NHM04_RS08235 WP_254266498.1 1876869..1878242(-) (radA) [Gilvimarinus sp. DA14]
ATGGCTAGCAAACAAAAAGTCGCTTACGTCTGCAATGAATGTGGTGCCGATTTCTCCAAGTGGCAGGGGCAGTGCAGCGA
GTGTGGTACCTGGAACTCGGTGGTGGAAATGAAATTGGGGCCGGCGCCCAAAGGCGGGGCGCGCAATGCTCAGTTTAGTG
GTTACGCCGGTAGCGCTGGCTCCAAAGTGCAGACTCTGGCGGATATCAGCCTGGAGGACTTGCCACGTTTGAGTACCGGC
ACGGGTGAGTTTGACCGGGTGCTGGGCGGTGGCCTGGTTCCCGGCTCGGTGGTGTTAATAGGCGGGCACCCAGGCGCGGG
TAAAAGTACGGTGCTGCTGCAAACCTTGTGCAAAATCGCTGAGCAATTGAGTTGTCTTTACGTAACAGGTGAAGAGTCGC
TGCAGCAGGTCGCTATGCGCGCCAATCGGTTGGGGCTGCCCACCGACAAACTGCAAATGCTGTCGGAAACCAGCGTCGAA
CTGATCGGGCAGGCGGCCGAGCAGCTGCAGCCCAAGGTGATGGTGGTGGACTCGATTCAGGTGGTGCATTTATCCGATAT
TCAATCGGCACCTGGTTCGGTATCGCAAGTGCGCGAAGCGGCGGCCTATTTGACGCGCTTTGCCAAACAAACTGGCACCG
TGGTTATTTTGGTGGGGCATGTAACCAAAGACGGATCACTGGCAGGGCCCAAGGTGCTTGAGCATATGATTGACTGCTCT
ATTTTGCTGGAGGGTTCACACGACTCGCGGTTTCGCACCCTGCGTGGCAATAAAAATCGCTTTGGCGCGGTGAACGAGCT
TGGCGTGTTTGCCATGACCGAAAAAGGTCTGAAAGAGGTCAGCAACCCCTCCGCCATTTTTTTGCAGCGCGGCGACGAAG
TAGCCTCGGGGTCGGTGGTGATGGTGATGTGGGAGGGCACCCGCCCGCTGCTGGTGGAAATTCAAGCTCTGGTGGATGAC
AGCCATCTGGGCAATCCGCGTCGGGTGGCGGTAGGTTTGGATCAGAATCGGTTGTCCATGTTGCTTGCGGTGCTGCACCG
TCACGGCGGAGTGCTGGTTGGCGATCAAGATGTGTTTGTCAATGTGGTGGGTGGCGTGCGTGTGGCCGAAACCAGTGCGG
ACTTGGCGTTGGTATTGGCCATAGTCTCCAGTTTTCGCGACCGCCCACTGGCGCACGATTTAATGGTGTTTGGCGAGATA
GGCCTGTCCGGCGAAATCCGCCCCGTACCCAGCGGTCAGGAGCGTTTGCGCGAAGCGGCGAAGCACGGCTTTAAGCGGGC
GATTGTGCCTATTGGCAATGCTCCCAAAGCAATGGATGGTATTGAAATCGTTGCCGTAAAAAGTCTGAGTGAAGCCCTGG
CGGCCATTGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(90-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

100

0.484
  radA Streptococcus mitis SK321

42.795

100

0.429
  radA Streptococcus pneumoniae Rx1

42.484

100

0.427
  radA Streptococcus pneumoniae R6

42.484

100

0.427
  radA Streptococcus pneumoniae TIGR4

42.484

100

0.427
  radA Streptococcus pneumoniae D39

42.484

100

0.427
  radA Streptococcus mitis NCTC 12261

42.484

100

0.427