Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   NKZ79_RS11250 Genome accession   NZ_CP100340
Coordinates   2248792..2249556 (+) Length   254 a.a.
NCBI ID   WP_024417788.1    Uniprot ID   -
Organism   Streptococcus suis strain STC78     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2243792..2254556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ79_RS11235 (NKZ79_11235) - 2246173..2246856 (-) 684 WP_004194526.1 YoaK family protein -
  NKZ79_RS11240 (NKZ79_11240) rlmH 2246881..2247360 (-) 480 WP_024417790.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NKZ79_RS11245 (NKZ79_11245) htrA 2247535..2248731 (+) 1197 WP_024417789.1 trypsin-like peptidase domain-containing protein Regulator
  NKZ79_RS11250 (NKZ79_11250) spo0J 2248792..2249556 (+) 765 WP_024417788.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29009.28 Da        Isoelectric Point: 9.4760

>NTDB_id=704686 NKZ79_RS11250 WP_024417788.1 2248792..2249556(+) (spo0J) [Streptococcus suis strain STC78]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLSGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLINRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=704686 NKZ79_RS11250 WP_024417788.1 2248792..2249556(+) (spo0J) [Streptococcus suis strain STC78]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTATCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAATAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547