Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PDI59_RS03130 Genome accession   NZ_CP115478
Coordinates   641479..642450 (+) Length   323 a.a.
NCBI ID   WP_000876318.1    Uniprot ID   A0A0H2XIG1
Organism   Staphylococcus aureus strain HP20814-062     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 636479..647450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI59_RS03110 (PDI59_03110) nrdI 637549..637947 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  PDI59_RS03115 (PDI59_03115) nrdE 637910..640015 (+) 2106 WP_000855514.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  PDI59_RS03120 (PDI59_03120) nrdF 640133..641104 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  PDI59_RS03125 (PDI59_03125) - 641285..641440 (+) 156 WP_000499195.1 hypothetical protein -
  PDI59_RS03130 (PDI59_03130) ceuB 641479..642450 (+) 972 WP_000876318.1 ABC transporter permease Machinery gene
  PDI59_RS03135 (PDI59_03135) - 642437..643393 (+) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  PDI59_RS03140 (PDI59_03140) - 643390..644150 (+) 761 Protein_606 ABC transporter ATP-binding protein -
  PDI59_RS03145 (PDI59_03145) - 644269..645297 (+) 1029 WP_000754443.1 siderophore ABC transporter substrate-binding protein -
  PDI59_RS03150 (PDI59_03150) - 645614..645928 (-) 315 WP_001127269.1 CHY zinc finger protein -
  PDI59_RS03155 (PDI59_03155) murB 645946..646869 (-) 924 WP_000608433.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35582.13 Da        Isoelectric Point: 10.1194

>NTDB_id=704680 PDI59_RS03130 WP_000876318.1 641479..642450(+) (ceuB) [Staphylococcus aureus strain HP20814-062]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=704680 PDI59_RS03130 WP_000876318.1 641479..642450(+) (ceuB) [Staphylococcus aureus strain HP20814-062]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAATCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTTTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XIG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471