Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NKZ79_RS09740 Genome accession   NZ_CP100340
Coordinates   1939293..1941083 (-) Length   596 a.a.
NCBI ID   WP_204101698.1    Uniprot ID   -
Organism   Streptococcus suis strain STC78     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934293..1946083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ79_RS09720 (NKZ79_09720) - 1935100..1936002 (-) 903 WP_002938141.1 ABC transporter permease -
  NKZ79_RS09725 (NKZ79_09725) opp4B 1936016..1936972 (-) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  NKZ79_RS09730 (NKZ79_09730) - 1936974..1937915 (-) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  NKZ79_RS09735 (NKZ79_09735) - 1937918..1938916 (-) 999 WP_009910778.1 ABC transporter ATP-binding protein -
  NKZ79_RS09740 (NKZ79_09740) oppA 1939293..1941083 (-) 1791 WP_204101698.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NKZ79_RS09745 (NKZ79_09745) - 1941472..1942425 (+) 954 WP_024376800.1 IS30 family transposase -
  NKZ79_RS09750 (NKZ79_09750) pbp3 1942542..1943783 (+) 1242 WP_024417841.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NKZ79_RS09755 (NKZ79_09755) sufB 1944057..1945472 (-) 1416 WP_024417840.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65811.91 Da        Isoelectric Point: 4.6954

>NTDB_id=704679 NKZ79_RS09740 WP_204101698.1 1939293..1941083(-) (oppA) [Streptococcus suis strain STC78]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISMFGYDGERKLDDSGLAKAEFDVKGKKITISLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAKMPVDQLDSYKDVSNLNIVGQLESSYEYI
SFNLGKYDEAANKNVMDEKAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDPAID
MYAGGWSTGYDPNPSGLWGSVAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=704679 NKZ79_RS09740 WP_204101698.1 1939293..1941083(-) (oppA) [Streptococcus suis strain STC78]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGACTCAACA
TTTGGTGGTTTTGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTGAAAGGTAAAAAAATCACAATTAGCTTGACAGGCAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGCATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGACCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTTTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTAAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGTTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATCTTGGTAAATATGACGAAGCAGCTAATAAGAACGTTATGGATGAAAAGGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCAATTGATACCAAGACAGCTGGCAAATCATTGTACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGGGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGCGTTCAAAATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATATATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTACAACTCAGTTCAAGCTAATGATCCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAATCCAAGTGGTCTATGGGGGTCTGTCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.477

100

0.965