Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PDI55_RS10515 Genome accession   NZ_CP115477
Coordinates   2117504..2118292 (+) Length   262 a.a.
NCBI ID   WP_223808656.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HP20814-043     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112504..2123292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI55_RS10485 (PDI55_10485) - 2112721..2113347 (+) 627 WP_000522381.1 nitroreductase family protein -
  PDI55_RS10490 (PDI55_10490) - 2113708..2114493 (+) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  PDI55_RS10495 (PDI55_10495) - 2115093..2115227 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  PDI55_RS10500 (PDI55_10500) - 2115463..2116026 (+) 564 WP_001105696.1 accessory gene regulator ArgB-like protein -
  PDI55_RS10505 (PDI55_10505) agrD 2116029..2116172 (+) 144 WP_001094921.1 cyclic lactone autoinducer peptide AgrD -
  PDI55_RS10510 (PDI55_10510) agrC 2116202..2117485 (+) 1284 WP_031786194.1 quorum-sensing sensor histidine kinase AgrC -
  PDI55_RS10515 (PDI55_10515) agrA 2117504..2118292 (+) 789 WP_223808656.1 quorum-sensing response regulator AgrA Regulator
  PDI55_RS10520 (PDI55_10520) - 2118335..2119654 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  PDI55_RS10525 (PDI55_10525) - 2119657..2119734 (+) 78 Protein_2041 hypothetical protein -
  PDI55_RS10530 (PDI55_10530) - 2119812..2119921 (+) 110 Protein_2042 hypothetical protein -
  PDI55_RS10535 (PDI55_10535) - 2120109..2121068 (-) 960 WP_001253312.1 carbohydrate kinase -
  PDI55_RS10540 (PDI55_10540) - 2121065..2122549 (-) 1485 WP_190283122.1 glycoside hydrolase family 32 protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 30706.25 Da        Isoelectric Point: 6.8986

>NTDB_id=704656 PDI55_RS10515 WP_223808656.1 2117504..2118292(+) (agrA) [Staphylococcus aureus strain HP20814-043]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKRFF
IFYGGKVKLPAFFNTQKAQLPL

Nucleotide


Download         Length: 789 bp        

>NTDB_id=704656 PDI55_RS10515 WP_223808656.1 2117504..2118292(+) (agrA) [Staphylococcus aureus strain HP20814-043]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAAGGTTCTTC
ATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

90.458

0.905