Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PDI55_RS10015 Genome accession   NZ_CP115477
Coordinates   2024838..2025656 (-) Length   272 a.a.
NCBI ID   WP_001124422.1    Uniprot ID   P66002
Organism   Staphylococcus aureus strain HP20814-043     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019838..2030656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI55_RS09995 (PDI55_09995) - 2020931..2021908 (+) 978 WP_000379098.1 metal-dependent hydrolase -
  PDI55_RS10000 (PDI55_10000) - 2022169..2023005 (-) 837 WP_000886462.1 membrane protein -
  PDI55_RS10005 (PDI55_10005) - 2023014..2024531 (-) 1518 WP_000535834.1 ABC transporter ATP-binding protein -
  PDI55_RS10010 (PDI55_10010) - 2024546..2024860 (-) 315 WP_000435806.1 YfhH family protein -
  PDI55_RS10015 (PDI55_10015) recX 2024838..2025656 (-) 819 WP_001124422.1 recombination regulator RecX Regulator
  PDI55_RS10020 (PDI55_10020) - 2025870..2027189 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  PDI55_RS10025 (PDI55_10025) - 2027192..2027263 (+) 72 Protein_1940 hypothetical protein -
  PDI55_RS10030 (PDI55_10030) - 2027361..2027651 (-) 291 WP_000671712.1 MAP domain-containing protein -
  PDI55_RS10035 (PDI55_10035) eap 2027666..2029096 (-) 1431 WP_001557458.1 extracellular adherence protein Eap/Map -
  PDI55_RS10040 (PDI55_10040) - 2029485..2029682 (+) 198 WP_000239610.1 phospholipase -
  PDI55_RS10045 (PDI55_10045) - 2030054..2030233 (+) 180 WP_000669789.1 hypothetical protein -
  PDI55_RS14325 - 2030257..2030565 (+) 309 WP_001795394.1 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32259.10 Da        Isoelectric Point: 5.9211

>NTDB_id=704652 PDI55_RS10015 WP_001124422.1 2024838..2025656(-) (recX) [Staphylococcus aureus strain HP20814-043]
MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
IQYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEMFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=704652 PDI55_RS10015 WP_001124422.1 2024838..2025656(-) (recX) [Staphylococcus aureus strain HP20814-043]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGTTTTAATCTTTTTTTAGACGAACAATTTGAAAT
GGGTATAGATATCGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAACAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
ATTCAATATTTACAAAAAGAAGAGATATCAGAGCAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCGGAAAGTTTAAAAAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTTTATCAACTTGGTATAGAACCAAATATCATTGAAATGTTTACAGAACTTTATAGAGAACAACAGGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAAGGACCACAAAATAAGGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAAACCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGCGGTTTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAGAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66002

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

99.632

100

0.996