Detailed information NTG0704598

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: PDI55_RS03905
• Genome accession: NZ_CP115477
• Coordinates: 822520..823602 (+)
• Length: 360 a.a.
• NCBI ID: WP_001557172.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain HP20814-043
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 817520..828602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PDI55_RS03880 (PDI55_03880)	-	817765..818820 (+)	1056	WP_000258150.1	MraY family glycosyltransferase	-
PDI55_RS03885 (PDI55_03885)	-	818978..819055 (-)	78	Protein_755	hypothetical protein	-
PDI55_RS03890 (PDI55_03890)	-	819058..820377 (-)	1320	WP_001557163.1	ISL3-like element IS1181 family transposase	-
PDI55_RS03895 (PDI55_03895)	-	820505..821146 (-)	642	WP_000192949.1	YigZ family protein	-
PDI55_RS03900 (PDI55_03900)	fakB1	821290..822156 (+)	867	WP_000686344.1	fatty acid kinase binding subunit FakB1	-
PDI55_RS03905 (PDI55_03905)	comFA	822520..823602 (+)	1083	WP_001557172.1	DEAD/DEAH box helicase	Machinery gene
PDI55_RS03910 (PDI55_03910)	-	823595..824269 (+)	675	WP_001057965.1	ComF family protein	-
PDI55_RS03915 (PDI55_03915)	raiA	824330..824902 (+)	573	WP_000617735.1	ribosome-associated translation inhibitor RaiA	-
PDI55_RS03920 (PDI55_03920)	secA	825316..827847 (+)	2532	WP_000506531.1	preprotein translocase subunit SecA	-
PDI55_RS03925 (PDI55_03925)	-	827889..827993 (+)	105	WP_001790092.1	hypothetical protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42017.47 Da
• Isoelectric Point: 9.6864

>NTDB_id=704598 PDI55_RS03905 WP_001557172.1 822520..823602(+) (comFA) [Staphylococcus aureus strain HP20814-043]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=704598 PDI55_RS03905 WP_001557172.1 822520..823602(+) (comFA) [Staphylococcus aureus strain HP20814-043]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTGCTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Type III restriction enzyme, res subunit (ResIII) (25-173)

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	38.938	94.167	0.367