Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   PDI57_RS09075 Genome accession   NZ_CP115476
Coordinates   1862965..1864239 (+) Length   424 a.a.
NCBI ID   WP_190281416.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HP20814-006     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1857965..1869239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI57_RS09055 (PDI57_09060) - 1859289..1859384 (+) 96 WP_031761395.1 hypothetical protein -
  PDI57_RS09060 (PDI57_09065) - 1859345..1860475 (-) 1131 WP_000721699.1 HAD family hydrolase -
  PDI57_RS09065 (PDI57_09070) nagE 1860582..1862048 (-) 1467 WP_000276367.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  PDI57_RS09070 (PDI57_09075) - 1862176..1862793 (-) 618 WP_000287588.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  PDI57_RS09075 (PDI57_09080) htrA 1862965..1864239 (+) 1275 WP_190281416.1 S1C family serine protease Regulator
  PDI57_RS09080 (PDI57_09085) tyrS 1864333..1865595 (-) 1263 WP_000186029.1 tyrosine--tRNA ligase -
  PDI57_RS09085 (PDI57_09090) - 1865977..1866882 (+) 906 WP_000184370.1 transglycosylase domain-containing protein -
  PDI57_RS09090 (PDI57_09095) - 1866862..1866954 (-) 93 WP_031761401.1 hypothetical protein -

Sequence


Protein


Download         Length: 424 a.a.        Molecular weight: 45789.99 Da        Isoelectric Point: 9.9696

>NTDB_id=704563 PDI57_RS09075 WP_190281416.1 1862965..1864239(+) (htrA) [Staphylococcus aureus strain HP20814-006]
MSDFNHTDHSTTNHSQTPRYRRPKFPWFKTVIVALIAGIIGALLVLGIGKVLNSTILNKDGSTVQTTNNKGGNQLDGQSK
KFGTVHEMIKSVSPTIVGVINMQKASSVDDLLKGKSSKPSEAGVGSGVIYQINNNSAYIVTNNHVIDGANEIRVQLHNKK
QVKAKLVGKDAVTDIAVLKIENTKGIKAIQFANSSKVQTGDSVFAMGNPLGLQFANSVTSGIISASERTIDAETTGGNTK
VSVLQTDAAINPGNSGGALVDITGNLVGINSMKIAATQVEGIGFAIPSNEVKVTIEQLVKHGKIDRPSIGIGLINLKDIP
EEEREQLHTDREDGIYVAKADSDIDLKKGDIITEIDGKKIKDDVDLRSYLYENKKPGESVTVTVIRDGKTKEVKVKLKQQ
KEQPKRQSRSERQSPGQGDRDFFR

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=704563 PDI57_RS09075 WP_190281416.1 1862965..1864239(+) (htrA) [Staphylococcus aureus strain HP20814-006]
ATGTCAGATTTTAATCATACAGATCATTCTACAACAAACCATAGCCAAACACCTAGATACAGAAGACCTAAATTTCCATG
GTTTAAAACAGTCATCGTTGCATTGATTGCTGGAATTATTGGTGCACTTCTAGTACTTGGTATAGGCAAAGTATTAAATA
GTACAATTTTAAATAAAGATGGTTCAACTGTTCAGACAACAAATAATAAAGGTGGCAATCAATTAGACGGTCAAAGCAAG
AAATTCGGTACCGTTCATGAAATGATAAAATCTGTCTCCCCTACAATTGTTGGAGTTATTAACATGCAAAAAGCATCAAG
TGTAGACGACTTATTAAAAGGCAAATCATCTAAACCATCTGAAGCTGGAGTAGGTTCAGGTGTTATCTATCAAATAAACA
ACAATTCAGCTTATATCGTTACAAACAATCATGTTATTGATGGCGCAAATGAAATTAGAGTCCAATTACATAATAAAAAA
CAAGTTAAAGCGAAATTAGTTGGTAAAGATGCAGTAACTGATATTGCTGTACTTAAAATTGAAAATACAAAAGGTATTAA
AGCGATTCAATTTGCCAACTCTTCAAAAGTACAAACTGGCGATAGCGTATTCGCAATGGGTAACCCATTAGGATTACAAT
TTGCTAACTCTGTAACATCTGGTATCATTTCAGCAAGCGAACGTACGATTGACGCTGAGACAACTGGTGGCAATACAAAA
GTTAGCGTTCTTCAAACAGATGCTGCTATTAACCCAGGTAACTCAGGTGGCGCATTAGTAGATATTACTGGTAATTTAGT
TGGTATTAACTCAATGAAAATTGCTGCGACACAAGTTGAAGGTATCGGGTTTGCTATTCCAAGTAATGAAGTTAAAGTAA
CAATTGAACAACTTGTAAAACATGGTAAAATTGACCGCCCTTCGATTGGTATTGGTTTAATTAATTTGAAAGATATTCCT
GAAGAAGAGCGCGAGCAACTTCATACTGATAGAGAAGACGGTATTTATGTCGCCAAAGCTGATAGTGATATTGATCTTAA
AAAAGGTGATATTATTACAGAAATTGATGGCAAGAAAATTAAAGATGATGTTGATTTAAGAAGCTATTTATATGAAAATA
AAAAACCTGGTGAATCAGTCACTGTTACCGTTATCCGTGATGGTAAAACAAAAGAAGTTAAAGTGAAATTAAAACAACAA
AAAGAACAACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

39.055

94.811

0.37