Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PDI58_RS07070 Genome accession   NZ_CP115474
Coordinates   1348982..1350064 (-) Length   360 a.a.
NCBI ID   WP_001557172.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AF4005     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1343982..1355064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI58_RS07050 (PDI58_07050) - 1344591..1344695 (-) 105 WP_001790092.1 hypothetical protein -
  PDI58_RS07055 (PDI58_07055) secA 1344737..1347268 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  PDI58_RS07060 (PDI58_07060) raiA 1347682..1348254 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  PDI58_RS07065 (PDI58_07065) - 1348315..1348989 (-) 675 WP_001057965.1 ComF family protein -
  PDI58_RS07070 (PDI58_07070) comFA 1348982..1350064 (-) 1083 WP_001557172.1 DEAD/DEAH box helicase Machinery gene
  PDI58_RS07075 (PDI58_07075) fakB1 1350428..1351294 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  PDI58_RS07080 (PDI58_07080) - 1351438..1352079 (+) 642 WP_000192949.1 YigZ family protein -
  PDI58_RS07085 (PDI58_07085) - 1352244..1353299 (-) 1056 WP_216798507.1 MraY family glycosyltransferase -
  PDI58_RS07090 (PDI58_07090) - 1353617..1354687 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42017.47 Da        Isoelectric Point: 9.6864

>NTDB_id=704469 PDI58_RS07070 WP_001557172.1 1348982..1350064(-) (comFA) [Staphylococcus aureus strain AF4005]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=704469 PDI58_RS07070 WP_001557172.1 1348982..1350064(-) (comFA) [Staphylococcus aureus strain AF4005]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTGCTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367