Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   NKZ80_RS11240 Genome accession   NZ_CP100330
Coordinates   2246328..2247092 (+) Length   254 a.a.
NCBI ID   WP_024417788.1    Uniprot ID   -
Organism   Streptococcus suis strain STC85     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2241328..2252092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ80_RS11225 (NKZ80_11225) - 2243709..2244392 (-) 684 WP_004194526.1 YoaK family protein -
  NKZ80_RS11230 (NKZ80_11230) rlmH 2244417..2244896 (-) 480 WP_024417790.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NKZ80_RS11235 (NKZ80_11235) htrA 2245071..2246267 (+) 1197 WP_024417789.1 trypsin-like peptidase domain-containing protein Regulator
  NKZ80_RS11240 (NKZ80_11240) spo0J 2246328..2247092 (+) 765 WP_024417788.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29009.28 Da        Isoelectric Point: 9.4760

>NTDB_id=704411 NKZ80_RS11240 WP_024417788.1 2246328..2247092(+) (spo0J) [Streptococcus suis strain STC85]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLSGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLINRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=704411 NKZ80_RS11240 WP_024417788.1 2246328..2247092(+) (spo0J) [Streptococcus suis strain STC85]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTATCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAATAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547