Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NKZ80_RS03835 Genome accession   NZ_CP100330
Coordinates   749994..750935 (+) Length   313 a.a.
NCBI ID   WP_024381435.1    Uniprot ID   A0A075SIN6
Organism   Streptococcus suis strain STC85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 744994..755935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ80_RS03820 (NKZ80_03820) - 745843..746880 (-) 1038 WP_024417519.1 3-deoxy-7-phosphoheptulonate synthase -
  NKZ80_RS03825 (NKZ80_03825) - 747181..747774 (-) 594 WP_012027204.1 DUF1361 domain-containing protein -
  NKZ80_RS03830 (NKZ80_03830) metG 747930..749933 (+) 2004 WP_024417518.1 methionine--tRNA ligase -
  NKZ80_RS03835 (NKZ80_03835) coiA 749994..750935 (+) 942 WP_024381435.1 competence protein CoiA Machinery gene
  NKZ80_RS03840 (NKZ80_03840) pepF 751166..752968 (+) 1803 WP_024381434.1 oligoendopeptidase F Regulator
  NKZ80_RS03845 (NKZ80_03845) - 752970..753410 (+) 441 WP_204101669.1 hypothetical protein -
  NKZ80_RS03850 (NKZ80_03850) - 753426..753974 (+) 549 WP_002938103.1 DUF6630 family protein -
  NKZ80_RS03855 (NKZ80_03855) - 754049..754768 (+) 720 WP_009910106.1 O-methyltransferase -
  NKZ80_RS03860 (NKZ80_03860) prsA 754829..755830 (+) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36249.85 Da        Isoelectric Point: 8.0997

>NTDB_id=704382 NKZ80_RS03835 WP_024381435.1 749994..750935(+) (coiA) [Streptococcus suis strain STC85]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGFQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRALPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=704382 NKZ80_RS03835 WP_024381435.1 749994..750935(+) (coiA) [Streptococcus suis strain STC85]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCTGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTTTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGCTTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGATAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.564

99.681

0.524
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428