Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PDI56_RS06775 Genome accession   NZ_CP115473
Coordinates   1309681..1310763 (-) Length   360 a.a.
NCBI ID   WP_001557172.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AF4004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304681..1315763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS06755 (PDI56_06755) - 1305290..1305394 (-) 105 WP_001790092.1 hypothetical protein -
  PDI56_RS06760 (PDI56_06760) secA 1305436..1307967 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  PDI56_RS06765 (PDI56_06765) raiA 1308381..1308953 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  PDI56_RS06770 (PDI56_06770) - 1309014..1309688 (-) 675 WP_001057965.1 ComF family protein -
  PDI56_RS06775 (PDI56_06775) comFA 1309681..1310763 (-) 1083 WP_001557172.1 DEAD/DEAH box helicase Machinery gene
  PDI56_RS06780 (PDI56_06780) fakB1 1311127..1311993 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  PDI56_RS06785 (PDI56_06785) - 1312137..1312778 (+) 642 WP_000192949.1 YigZ family protein -
  PDI56_RS06790 (PDI56_06790) - 1312943..1313998 (-) 1056 WP_000258150.1 MraY family glycosyltransferase -
  PDI56_RS06795 (PDI56_06795) - 1314316..1315386 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42017.47 Da        Isoelectric Point: 9.6864

>NTDB_id=704380 PDI56_RS06775 WP_001557172.1 1309681..1310763(-) (comFA) [Staphylococcus aureus strain AF4004]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=704380 PDI56_RS06775 WP_001557172.1 1309681..1310763(-) (comFA) [Staphylococcus aureus strain AF4004]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTGCTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367