Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PDI56_RS03820 Genome accession   NZ_CP115473
Coordinates   738026..738649 (+) Length   207 a.a.
NCBI ID   WP_001208755.1    Uniprot ID   P65819
Organism   Staphylococcus aureus strain AF4004     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 733026..743649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS03790 (PDI56_03785) - 733999..734466 (-) 468 WP_000966142.1 CcdC family protein -
  PDI56_RS03795 (PDI56_03790) - 734560..734658 (-) 99 WP_001789897.1 hypothetical protein -
  PDI56_RS03800 (PDI56_03795) - 734645..734887 (-) 243 WP_000246909.1 YneF family protein -
  PDI56_RS03805 (PDI56_03800) recP/tkt 735165..737153 (-) 1989 WP_000481443.1 transketolase Machinery gene
  PDI56_RS03810 (PDI56_03805) - 737274..737513 (-) 240 WP_000071351.1 DUF896 domain-containing protein -
  PDI56_RS03815 (PDI56_03810) sosA 737650..737883 (-) 234 WP_000499650.1 DNA damage-induced cell division inhibitor SosA -
  PDI56_RS03820 (PDI56_03815) dinR/lexA 738026..738649 (+) 624 WP_001208755.1 transcriptional repressor LexA Regulator
  PDI56_RS03825 (PDI56_03820) - 739029..740045 (-) 1017 WP_001797872.1 CAP domain-containing protein -
  PDI56_RS03830 (PDI56_03830) guaC 740067..741044 (-) 978 WP_000688122.1 GMP reductase -
  PDI56_RS03835 (PDI56_03835) rpsN 741201..741470 (-) 270 WP_001085655.1 30S ribosomal protein S14 -
  PDI56_RS03840 (PDI56_03840) rpmG 741924..742073 (-) 150 WP_001265708.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23331.55 Da        Isoelectric Point: 4.8811

>NTDB_id=704355 PDI56_RS03820 WP_001208755.1 738026..738649(+) (dinR/lexA) [Staphylococcus aureus strain AF4004]
MRELTKRQSEIYNYIKQVVQMKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEIVSDQTNDNINME
ETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
EEDEATVKRFYKEKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM

Nucleotide


Download         Length: 624 bp        

>NTDB_id=704355 PDI56_RS03820 WP_001208755.1 738026..738649(+) (dinR/lexA) [Staphylococcus aureus strain AF4004]
ATGAGAGAATTAACAAAACGACAAAGCGAAATATATAACTATATTAAACAAGTTGTTCAAATGAAAGGTTATCCGCCTAG
TGTTCGCGAAATTGGTGAAGCAGTTGGCTTAGCATCCAGTTCAACTGTTCATGGTCATCTTTCACGTCTTGAAGAAAAAG
GATATATAAGAAGAGATCCAACGAAACCACGTGCTATAGAAATTGTAAGTGATCAAACAAATGATAATATTAATATGGAA
GAAACGATTCATGTGCCAGTTATTGGTAAAGTCACAGCAGGTGTTCCTATTACCGCTGTAGAAAATATTGAAGAGTATTT
TCCATTACCTGAACACTTAACATCGACACATAATAGCGACATATTCATATTAAACGTCGTAGGCGACAGTATGATTGAGG
CTGGTATATTAGACGGAGACAAAGTAATTGTTCGCAGTCAAACCATAGCAGAAAATGGAGACATTATTGTTGCTATGACT
GAGGAAGATGAAGCAACTGTCAAACGCTTCTATAAAGAAAAAAATCGTTATCGATTACAACCTGAAAATAGTACAATGGA
GCCAATTTACCTCGACAATGTTGCTGTAATTGGGAAAGTAATTGGTTTGTACCGCGAAATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(86-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65819

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

66.341

99.034

0.657