Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PDI56_RS03250 Genome accession   NZ_CP115473
Coordinates   587402..588028 (-) Length   208 a.a.
NCBI ID   WP_001108889.1    Uniprot ID   Q7B2U9
Organism   Staphylococcus aureus strain AF4004     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 582402..593028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS03230 (PDI56_03225) - 582975..583661 (+) 687 WP_000362218.1 DnaD domain-containing protein -
  PDI56_RS03235 (PDI56_03230) nth 583651..584310 (+) 660 WP_000253765.1 endonuclease III -
  PDI56_RS03240 (PDI56_03235) - 584315..584656 (+) 342 WP_000182021.1 YpoC family protein -
  PDI56_RS03245 (PDI56_03240) - 585222..587405 (-) 2184 WP_000138350.1 transglycosylase domain-containing protein -
  PDI56_RS03250 (PDI56_03245) recU 587402..588028 (-) 627 WP_001108889.1 Holliday junction resolvase RecU Machinery gene
  PDI56_RS03255 (PDI56_03250) - 588334..588513 (+) 180 WP_001788819.1 hypothetical protein -
  PDI56_RS03260 (PDI56_03255) - 588568..588918 (+) 351 WP_001000806.1 YppE family protein -
  PDI56_RS03265 (PDI56_03260) - 588911..589474 (+) 564 WP_000241308.1 DUF1273 domain-containing protein -
  PDI56_RS03270 (PDI56_03265) gpsB 589488..589832 (+) 345 WP_001286320.1 cell division regulator GpsB -
  PDI56_RS03280 (PDI56_03275) - 590483..591628 (+) 1146 WP_000487154.1 class I SAM-dependent RNA methyltransferase -
  PDI56_RS03285 (PDI56_03280) - 591712..592044 (+) 333 WP_000516798.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24443.81 Da        Isoelectric Point: 9.7084

>NTDB_id=704351 PDI56_RS03250 WP_001108889.1 587402..588028(-) (recU) [Staphylococcus aureus strain AF4004]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=704351 PDI56_RS03250 WP_001108889.1 587402..588028(-) (recU) [Staphylococcus aureus strain AF4004]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7B2U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529