Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PDI56_RS00870 Genome accession   NZ_CP115473
Coordinates   139746..140486 (+) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AF4004     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 134746..145486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS00845 (PDI56_00845) yhaM 135162..136103 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  PDI56_RS00850 (PDI56_00850) - 136224..137186 (-) 963 WP_000782121.1 foldase protein PrsA -
  PDI56_RS00855 (PDI56_00855) - 137391..137948 (-) 558 WP_000477959.1 DUF3267 domain-containing protein -
  PDI56_RS00860 (PDI56_00860) - 138683..139048 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  PDI56_RS00865 (PDI56_00865) - 139190..139612 (-) 423 WP_000004981.1 HIT family protein -
  PDI56_RS00870 (PDI56_00870) pptA 139746..140486 (+) 741 WP_000216874.1 ABC transporter ATP-binding protein Regulator
  PDI56_RS00875 (PDI56_00875) - 140479..141702 (+) 1224 WP_000551836.1 ABC transporter permease -
  PDI56_RS00880 (PDI56_00880) traP 141826..142329 (-) 504 WP_000737976.1 signal transduction protein TRAP -
  PDI56_RS00885 (PDI56_00885) - 142492..142602 (+) 111 WP_001790154.1 hypothetical protein -
  PDI56_RS00890 (PDI56_00890) hemE 142592..143629 (+) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  PDI56_RS00895 (PDI56_00895) hemH 143687..144610 (+) 924 WP_000162881.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=704328 PDI56_RS00870 WP_000216874.1 139746..140486(+) (pptA) [Staphylococcus aureus strain AF4004]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=704328 PDI56_RS00870 WP_000216874.1 139746..140486(+) (pptA) [Staphylococcus aureus strain AF4004]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCATATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACATATAGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGACTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545