Detailed information NTG0704223

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: PCS88_RS23350
• Genome accession: NZ_CP115390
• Coordinates: 4813596..4814621 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain CUVET20-PYO1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4808596..4819621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCS88_RS23330 (PCS88_23295)	metJ	4809781..4810098 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
PCS88_RS23335 (PCS88_23300)	yiiX	4810158..4810766 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
PCS88_RS23340 (PCS88_23305)	rpmE	4810827..4811039 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
PCS88_RS23345 (PCS88_23310)	priA	4811242..4813440 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
PCS88_RS23350 (PCS88_23315)	cytR	4813596..4814621 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
PCS88_RS23355 (PCS88_23320)	ftsN	4814713..4815672 (+)	960	WP_000068834.1	cell division protein FtsN	-
PCS88_RS23360 (PCS88_23325)	hslV	4815765..4816295 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
PCS88_RS23365 (PCS88_23330)	hslU	4816305..4817636 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
PCS88_RS23370 (PCS88_23335)	menA	4817703..4818629 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
PCS88_RS23375 (PCS88_23340)	rraA	4818722..4819207 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
PCS88_RS23380 (PCS88_23345)	zapB	4819292..4819537 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=704223 PCS88_RS23350 WP_000644908.1 4813596..4814621(+) (cytR) [Escherichia coli strain CUVET20-PYO1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=704223 PCS88_RS23350 WP_000644908.1 4813596..4814621(+) (cytR) [Escherichia coli strain CUVET20-PYO1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625