Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VCA1004_RS15265 Genome accession   NZ_AP018689
Coordinates   199608..200129 (-) Length   173 a.a.
NCBI ID   WP_179949571.1    Uniprot ID   -
Organism   Vibrio aphrogenes strain CA-1004     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 194608..205129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1004_RS00925 - 194647..195558 (-) 912 WP_086981992.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  VCA1004_RS00930 hslU 195684..197021 (-) 1338 WP_086981993.1 HslU--HslV peptidase ATPase subunit -
  VCA1004_RS00935 hslV 197142..197660 (-) 519 WP_086981994.1 ATP-dependent protease subunit HslV -
  VCA1004_RS00945 - 198109..198690 (-) 582 WP_086981995.1 SPOR domain-containing protein -
  VCA1004_RS00950 cytR 198877..199674 (-) 798 Protein_158 DNA-binding transcriptional regulator CytR -
  VCA1004_RS15265 cytR 199608..200129 (-) 522 WP_179949571.1 LacI family DNA-binding transcriptional regulator Regulator
  VCA1004_RS00960 priA 200549..202750 (-) 2202 WP_086981996.1 primosomal protein N' -
  VCA1004_RS00965 rpmE 203019..203237 (+) 219 WP_086981997.1 50S ribosomal protein L31 -
  VCA1004_RS00970 - 203397..204656 (+) 1260 WP_086981998.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18991.97 Da        Isoelectric Point: 5.3037

>NTDB_id=70418 VCA1004_RS15265 WP_179949571.1 199608..200129(-) (cytR) [Vibrio aphrogenes strain CA-1004]
MATMKEVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLESGYAPNSLARNLRRNESKTIIVIVPDICDPYFSEIIRG
IEDTAAEHNYLVLLGDSNQQLKRESTFVNLVFTKQADGMLLLGADVPFDVSKPEQKNLPPLVMACEYAPELDVILISVKS
FAALKIRQPSTII

Nucleotide


Download         Length: 522 bp        

>NTDB_id=70418 VCA1004_RS15265 WP_179949571.1 199608..200129(-) (cytR) [Vibrio aphrogenes strain CA-1004]
ATGGCGACAATGAAGGAGGTTGCCCAACTCGCTGGAGTGTCAACAGCAACGGTTTCCCGTGCGCTGATGAATCCAGAAAA
AGTCTCCAGTGCAACACGTAAACGCGTGGAAGATGCCGTACTTGAATCCGGCTACGCTCCCAATTCTTTAGCTCGTAATT
TAAGAAGAAATGAATCTAAAACCATCATCGTCATTGTCCCGGATATCTGTGATCCTTATTTCAGTGAAATCATTCGCGGC
ATTGAAGATACGGCAGCCGAGCACAATTATTTAGTCTTATTGGGCGATAGCAATCAACAACTCAAGCGTGAGAGCACTTT
TGTCAATCTGGTATTCACCAAACAAGCTGATGGCATGCTGTTACTAGGGGCCGATGTACCATTCGACGTGAGTAAGCCTG
AACAAAAAAACCTTCCTCCTTTGGTCATGGCCTGTGAATACGCGCCAGAATTAGATGTGATCCTTATTTCAGTGAAATCA
TTCGCGGCATTGAAGATACGGCAGCCGAGCACAATTATTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding proteins and sugar binding domain of LacI family (Peripla_BP_1)

(60-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

82.822

94.22

0.78
  cytR Vibrio cholerae C6706

80.982

94.22

0.763

Multiple sequence alignment