Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NIK71_RS14135 Genome accession   NZ_CP100305
Coordinates   2895734..2896552 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain KBN10P05679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2890734..2901552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIK71_RS14120 (NIK71_14120) pilE 2890951..2891376 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  NIK71_RS14125 (NIK71_14125) pilY2 2891373..2891855 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  NIK71_RS14130 (NIK71_14130) pilY1 2891868..2895722 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  NIK71_RS14135 (NIK71_14135) pilX 2895734..2896552 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NIK71_RS14140 (NIK71_14140) pilW 2896549..2897550 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  NIK71_RS14145 (NIK71_14145) pilV 2897551..2898111 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  NIK71_RS14150 (NIK71_14150) fimU 2898105..2898578 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  NIK71_RS14155 (NIK71_14155) ispH 2898748..2899698 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NIK71_RS14160 (NIK71_14160) gmk 2899821..2900450 (+) 630 WP_000015937.1 guanylate kinase -
  NIK71_RS14165 (NIK71_14165) rpoZ 2900523..2900801 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NIK71_RS14170 (NIK71_14170) - 2900840..2900969 (+) 130 Protein_2777 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=704170 NIK71_RS14135 WP_000149374.1 2895734..2896552(-) (pilX) [Acinetobacter baumannii strain KBN10P05679]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=704170 NIK71_RS14135 WP_000149374.1 2895734..2896552(-) (pilX) [Acinetobacter baumannii strain KBN10P05679]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993