Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VCA1004_RS11195 Genome accession   NZ_AP018689
Coordinates   2469973..2471496 (-) Length   507 a.a.
NCBI ID   WP_086981824.1    Uniprot ID   -
Organism   Vibrio aphrogenes strain CA-1004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2464973..2476496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1004_RS11170 - 2465144..2465410 (+) 267 WP_086981821.1 YihD family protein -
  VCA1004_RS11175 ccoG 2465634..2467016 (+) 1383 WP_086981822.1 cytochrome c oxidase accessory protein CcoG -
  VCA1004_RS11180 - 2467074..2468075 (+) 1002 WP_408646858.1 serine/threonine protein kinase -
  VCA1004_RS11185 - 2468142..2468741 (+) 600 WP_086981823.1 thiol:disulfide interchange protein DsbA/DsbL -
  VCA1004_RS11190 - 2468982..2469869 (-) 888 WP_086984586.1 acyltransferase -
  VCA1004_RS11195 comM 2469973..2471496 (-) 1524 WP_086981824.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VCA1004_RS11200 ilvG 2471957..2473603 (+) 1647 WP_086981825.1 acetolactate synthase 2 catalytic subunit -
  VCA1004_RS11205 ilvM 2473603..2473857 (+) 255 WP_086981826.1 acetolactate synthase 2 small subunit -
  VCA1004_RS11210 - 2473888..2474826 (+) 939 WP_086981827.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55089.12 Da        Isoelectric Point: 6.5063

>NTDB_id=70415 VCA1004_RS11195 WP_086981824.1 2469973..2471496(-) (comM) [Vibrio aphrogenes strain CA-1004]
MELAIIHSRACVGVEAPEVTVEVHISNGMPGFSLVGLPETTVKESKDRVRSAILNSNFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILAASQQIALNKLDSHEFVGELALSGELRRVKGVLPAALACLKIPRTLVVPNDNGDQAALVGQELHKSAATL
LEVCADLCGQQTMGLFTTSETAVEPSNERDLQDIIGQQQGKRALEIAAAGSHNLLFLGPPGTGKTMLASRLCDLLPEMDD
DEALESASVASLTELEINHHNWKNRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGSQTRVNPQTILRYLSRLSGPLLDRFDMSIEIPALPKGTLSQGGER
GESTQVVKQRVWQARQVMLERSGKVNALLNSREIEVFCALQKPDAEFLEHALHQLGLSVRAYHRILKVARTIADLSQAQA
IEKAHLAEALGYRNMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=70415 VCA1004_RS11195 WP_086981824.1 2469973..2471496(-) (comM) [Vibrio aphrogenes strain CA-1004]
ATGGAGTTAGCAATAATACATAGCCGGGCCTGCGTTGGGGTTGAAGCGCCGGAAGTTACGGTCGAAGTGCATATTAGTAA
TGGGATGCCCGGATTTTCTTTAGTGGGGCTACCTGAAACCACGGTGAAAGAATCAAAAGACCGAGTACGGAGCGCGATTT
TAAATTCTAATTTTGAATTTCCATCAAAGCGAATTACGGTCAATTTAGCTCCCGCCGATTTACCCAAAGAAGGTGGCCGA
TTTGATTTGCCGATTGCTTTAGGCATTTTGGCGGCGTCACAACAAATTGCGCTTAATAAGTTGGACAGTCATGAATTTGT
CGGTGAACTGGCATTATCAGGGGAATTGCGTCGAGTCAAAGGGGTACTACCCGCCGCATTAGCTTGCTTGAAAATACCCA
GAACCTTAGTGGTGCCCAATGATAATGGTGATCAAGCGGCCTTAGTGGGGCAAGAGTTACATAAATCGGCGGCGACTTTA
TTAGAGGTATGCGCCGATTTGTGTGGTCAGCAAACCATGGGGTTGTTTACTACCTCGGAGACCGCTGTTGAACCTAGTAA
TGAGCGCGACCTGCAAGATATTATTGGCCAGCAGCAAGGTAAGCGCGCGCTCGAAATTGCCGCCGCAGGTTCACATAACC
TGTTATTTCTTGGACCTCCCGGGACGGGGAAAACCATGTTAGCGTCACGCCTGTGTGATTTGTTGCCTGAGATGGACGAT
GATGAAGCCTTAGAAAGTGCCTCGGTGGCGTCATTAACCGAGTTAGAAATTAATCACCATAATTGGAAGAATCGACCTTT
TCGTGCACCGCATCATTCCAGCTCTATGGCAGCGTTAGTGGGCGGCGGCTCGATCCCAAGGCCGGGTGAAATCTCATTGG
CTCATAATGGCTTATTATTTTTAGATGAAATGCCTGAGTTTGATCGTAAGGTGCTCGATTCCTTGCGTGAACCCTTAGAG
TCGGGGGAAATTATTATTTCACGGGCGGCGGGTAAAACGCGTTTTCCAGCACGCTTTCAATTGGTCGGGGCGTTAAATCC
AAGCCCTACCGGTTATTATGAAGGTTCACAAACCCGAGTCAATCCCCAAACCATTTTACGCTATTTAAGTCGTTTATCAG
GGCCATTACTGGATAGGTTTGATATGTCGATAGAAATTCCAGCGCTTCCTAAAGGGACGTTATCGCAAGGAGGAGAGCGG
GGTGAATCAACCCAAGTGGTCAAGCAACGGGTTTGGCAAGCAAGGCAAGTGATGCTAGAGCGTAGCGGCAAAGTGAATGC
GTTATTAAATAGTCGAGAAATTGAAGTGTTCTGTGCGTTGCAAAAGCCCGATGCGGAATTTTTAGAGCATGCCTTACATC
AATTAGGATTATCAGTACGAGCTTATCACCGCATTTTAAAAGTAGCGCGCACGATTGCCGATTTATCTCAAGCGCAAGCC
ATTGAAAAAGCCCATTTAGCAGAAGCGTTGGGCTATCGCAACATGGATCGTTTGTTAAAGCAGCTGACCGCTCAGGCTGT
GTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

82.446

100

0.824
  comM Vibrio campbellii strain DS40M4

82.446

100

0.824
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

62.745

100

0.631
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.023

100

0.438

Multiple sequence alignment