Detailed information NTG0704124

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NIX97_RS15595
• Genome accession: NZ_CP100291
• Coordinates: 3311243..3312418 (+)
• Length: 391 a.a.
• NCBI ID: WP_161521125.1
• Uniprot ID: -
• Organism: Burkholderia glumae strain R2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3306243..3317418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NIX97_RS15570	hisC	3306677..3307744 (+)	1068	WP_035983605.1	histidinol-phosphate transaminase	-
NIX97_RS15575	-	3307809..3308078 (-)	270	WP_015877053.1	YfhL family 4Fe-4S dicluster ferredoxin	-
NIX97_RS15580	-	3308363..3309685 (+)	1323	WP_017424335.1	TIGR00366 family protein	-
NIX97_RS15585	coaD	3309830..3310330 (-)	501	WP_015877055.1	pantetheine-phosphate adenylyltransferase	-
NIX97_RS15590	rsmD	3310441..3311055 (-)	615	WP_043225699.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
NIX97_RS15595	pilA	3311243..3312418 (+)	1176	WP_161521125.1	signal recognition particle-docking protein FtsY	Machinery gene
NIX97_RS15600	ybiB	3312988..3313965 (+)	978	WP_015877058.1	DNA-binding protein YbiB	-
NIX97_RS15605	leuA	3314379..3316028 (+)	1650	WP_017923767.1	2-isopropylmalate synthase	-
NIX97_RS15610	-	3316226..3316612 (-)	387	WP_015877060.1	nuclear transport factor 2 family protein	-
NIX97_RS15615	-	3316652..3317221 (-)	570	WP_017923408.1	acyloxyacyl hydrolase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 40790.76 Da
• Isoelectric Point: 5.4803

>NTDB_id=704124 NIX97_RS15595 WP_161521125.1 3311243..3312418(+) (pilA) [Burkholderia glumae strain R2]
MFSFFKRLIGSKADDASQDAPAADEQASAAHAPDAAGHAAAAASRPAPAPAHDAEPAASPAAPVPAAPAPAPAAVPAAPA
VEVVPPPAPEPAAKKSWIARLRSGLSKTSTSLTNVFVNTRIDDELYEELEAALLMSDAGIDATEYLLGALREKVRAERLS
DPLQVKAALRALLVDLLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAAREQLAI
WGERNNVTVVQQESGDPAAVIFDAVGAARARKIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAQSDAPHEVLLVIDANT
GQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFNAEEFADALLG

Nucleotide

• Length: 1176 bp

>NTDB_id=704124 NIX97_RS15595 WP_161521125.1 3311243..3312418(+) (pilA) [Burkholderia glumae strain R2]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGACGCGTCGCAGGACGCGCCGGCGGCCGACGAGCAAGC
CAGCGCGGCTCACGCGCCGGACGCGGCCGGGCATGCCGCCGCCGCGGCGAGCCGGCCGGCGCCCGCGCCGGCACACGACG
CCGAACCCGCCGCCAGCCCGGCTGCACCGGTGCCGGCCGCCCCCGCCCCCGCCCCTGCGGCCGTGCCCGCCGCCCCCGCC
GTCGAAGTCGTGCCGCCGCCCGCGCCTGAGCCGGCCGCGAAAAAATCCTGGATCGCACGACTACGCTCCGGGCTCTCGAA
GACGAGCACGAGCCTCACCAACGTGTTCGTCAATACCAGGATCGACGACGAACTCTACGAGGAGCTCGAAGCCGCGCTGC
TGATGTCCGATGCCGGCATCGACGCGACCGAATACCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCGCCGAACGCCTGAGC
GATCCGCTGCAGGTGAAGGCCGCGCTGCGCGCGCTGCTCGTCGACCTGCTCGCGCCGCTCGAGAAATCGCTGATGCTGGG
CCGCGCCCAGCCGCTCGTGATGATGATCGCGGGCGTCAACGGAGCCGGCAAGACCACCAGCATCGGTAAGCTCGCCAAAC
ACCTGCAGCGCTTCGACCAATCGGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTCGCGATC
TGGGGCGAGCGCAACAACGTGACCGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCCGTGATATTCGATGCGGTCGGCGC
CGCGCGCGCGCGCAAGATCGACGTGGTGATGGCCGACACCGCGGGCCGGTTGCCCACGCAGTTGCACCTGATGGAGGAAC
TGCGCAAGGTCAAGCGCGTGATCGGCAAGGCGCAGAGCGACGCGCCGCACGAGGTGCTGCTCGTGATCGACGCCAATACC
GGCCAGAACGCGCTCGCCCAGGTGAAGGCATTCGACGACGCGCTGGGCCTGACCGGGCTCATCGTCACCAAGCTCGACGG
CACCGCGAAGGGCGGCATTCTCGCCGCGATCGCGCGGCAGCGGCCGATACCCGTCTACTTCATCGGCGTCGGCGAGAAGG
TCGAGGACTTGCAGCCGTTCAACGCCGAGGAATTCGCCGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (192-391)

• SRP54-type protein, helical bundle domain (SRP54_N) (110-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.537	100	0.558