Detailed information NTG0704115

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCS90_RS18320
• Genome accession: NZ_CP115386
• Coordinates: 3725101..3726093 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUVET20-PYO2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3720101..3731093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCS90_RS18300 (PCS90_18255)	ygbM	3720732..3721508 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
PCS90_RS18305 (PCS90_18260)	ygbN	3721597..3722961 (+)	1365	WP_000104433.1	GntP family transporter	-
PCS90_RS18310 (PCS90_18265)	-	3723104..3724147 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
PCS90_RS18315 (PCS90_18270)	-	3724372..3724923 (+)	552	WP_001179442.1	flavodoxin family protein	-
PCS90_RS18320 (PCS90_18275)	rpoS	3725101..3726093 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PCS90_RS18325 (PCS90_18280)	nlpD	3726156..3727250 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PCS90_RS18330 (PCS90_18285)	pcm	3727435..3728061 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
PCS90_RS18335 (PCS90_18290)	surE	3728055..3728816 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PCS90_RS18340 (PCS90_18295)	truD	3728797..3729846 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
PCS90_RS18345 (PCS90_18300)	ispF	3729843..3730322 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCS90_RS18350 (PCS90_18305)	ispD	3730322..3731032 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=704115 PCS90_RS18320 WP_000081550.1 3725101..3726093(-) (rpoS) [Escherichia coli strain CUVET20-PYO2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=704115 PCS90_RS18320 WP_000081550.1 3725101..3726093(-) (rpoS) [Escherichia coli strain CUVET20-PYO2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715