Detailed information NTG0070406

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VCA1004_RS09440
• Genome accession: NZ_AP018689
• Coordinates: 2068002..2071385 (+)
• Length: 1127 a.a.
• NCBI ID: WP_232012589.1
• Uniprot ID: -
• Organism: Vibrio aphrogenes strain CA-1004
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2063002..2076385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCA1004_RS09420	erpA	2063158..2063499 (-)	342	WP_086981529.1	iron-sulfur cluster insertion protein ErpA	-
VCA1004_RS09425	hemL	2063845..2065137 (+)	1293	WP_086981530.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VCA1004_RS09430	-	2065551..2066636 (+)	1086	WP_086981531.1	AI-2E family transporter	-
VCA1004_RS09435	rsmC	2066744..2067769 (+)	1026	WP_086981532.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VCA1004_RS09440	chiS	2068002..2071385 (+)	3384	WP_232012589.1	response regulator	Regulator
VCA1004_RS09445	-	2072142..2073824 (+)	1683	WP_086981533.1	ABC transporter substrate-binding protein	-
VCA1004_RS09450	-	2074012..2074998 (+)	987	WP_086981534.1	ABC transporter permease	-
VCA1004_RS09455	-	2075001..2076026 (+)	1026	WP_086981535.1	ABC transporter permease	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 127166.85 Da
• Isoelectric Point: 6.0899

>NTDB_id=70406 VCA1004_RS09440 WP_232012589.1 2068002..2071385(+) (chiS) [Vibrio aphrogenes strain CA-1004]
MLKSRKTHKFQRLQHTLMVAFLVLSLTPLTIIGLFFLHSHSQDLQQQSTSYLVSVRDTKKQQINDYLKAKRSEALGIVRS
ELAYSSGGRFYGLISAFNKLGDSPEESRANAQQRYILGSGDQIKTSVLPDSKYYASTERYRLLHKRYHWAYLDILKRSDF
SDILLIDLGGDVAYSVQKNDDFGTNLLTGKYKDSMLGQTFQQLIEVVEKSRQNNEDYTPLVISDFSQSHGQQILWIGAPI
IQQGYLHSYAMFKLPSTELTNIVADNNKDITKLLIGSDQQARIQGITTEQITSSNAAIQKALSGETSVGSFSNLNEEKTL
AAYAPIHIQDKTWALVVELPEKDAYARVQQLKHIFYLVMLGGIIVVFVCSHYLSNFITLPLLKLTWVAERVSAGDLSQEI
VNIDRKDEIGRLATSFTRMQRSIKEKIELIGAQNTKLEDNIKIIRQQNDELHLANKLKDEFLATTSHELRTPLHGMVGIA
EALNSGANGPIPAHQRHQLSIIINSGQRLATLVDDLLDYHKMRYGNLDIQTTTVDLAATTQLVLELSKHLLGEKPIRIIN
QIPAELPLVLADAQRLEQVLYNLIGNAIKYTSEGKIIISATMLEKKIRIQVVDTGQGIPSDQLEHIFEPLIQAGQDSSRY
RQGAGLGLSISRQLIELMGGTLYVSSQPFVGTTFSFSLAIASEEDIQAHQTDTVQTHFQAPEVTSFINNEDDSLPQNPDG
PLLIVADDEPVNLQILDSFLRLEGYRVKTAVDGIQALALIEEEKPELLLLDIMMPGLNGYEVCQDVRKHYDHGQLPIILL
TALSQTNDRIKGFDVGANDYLNKPFNKQELAARIRAHLTASKAELRRIENAQLQQELRIREQVEASLLETQGRLLEQLES
APEAIICLREDGRIRFANDSAAKLFKRTPEQLKRSQGDEIIAPKYLSMTQEHYCGDIDIFVDDRREHITCDVLTLPEGSG
LKYMYIFNIGGGINAQRIDNLETAIEALSSYAFEGDKNKLQQLKELGGEFTRLADKVAHKSEDKQQVMREILVDTMNTAL
DYWESDTGQTKFTLAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNTIDYILEHTSLDNSQRQHLLCCREK
LQTLLTS

Nucleotide

• Length: 3384 bp

>NTDB_id=70406 VCA1004_RS09440 WP_232012589.1 2068002..2071385(+) (chiS) [Vibrio aphrogenes strain CA-1004]
ATGTTAAAGTCACGTAAGACTCATAAATTTCAAAGACTTCAGCACACTTTAATGGTGGCTTTTCTCGTTTTAAGTCTCAC
ACCTTTAACCATTATTGGGCTTTTTTTCTTACATTCTCACAGCCAAGATCTCCAACAGCAAAGCACCTCATATTTAGTCT
CTGTTCGCGACACGAAAAAACAACAAATTAACGATTATTTAAAAGCGAAACGCTCAGAAGCATTAGGGATTGTTCGTTCT
GAGCTTGCCTATTCAAGTGGAGGGCGTTTTTATGGTTTGATCAGCGCTTTTAATAAATTAGGTGACAGCCCTGAAGAATC
ACGGGCCAATGCTCAACAGCGTTATATCTTAGGCTCAGGCGATCAAATTAAGACTTCGGTATTGCCTGACTCGAAATATT
ACGCCAGTACTGAGCGTTATCGTCTTCTTCATAAACGCTATCACTGGGCTTATCTTGATATTTTAAAACGCTCTGATTTT
AGTGATATTTTATTAATCGACCTTGGCGGAGATGTCGCTTATTCGGTCCAAAAAAATGATGATTTCGGTACCAACCTGTT
AACTGGGAAATATAAAGACTCTATGTTAGGGCAGACTTTTCAGCAGTTAATTGAAGTCGTCGAAAAATCTCGTCAAAATA
ATGAAGATTACACTCCCCTTGTGATTTCAGATTTCTCTCAAAGCCACGGTCAACAAATCCTTTGGATAGGCGCGCCTATT
ATTCAGCAAGGCTACCTTCACAGCTATGCCATGTTTAAATTGCCCAGCACCGAATTAACCAATATTGTGGCCGATAACAA
TAAAGACATAACGAAATTATTAATTGGTTCCGATCAACAAGCTCGCATTCAAGGCATCACAACTGAGCAAATCACCTCTA
GCAACGCAGCCATTCAAAAAGCCTTATCTGGCGAGACCTCTGTCGGATCATTTAGCAACCTAAATGAAGAAAAAACTCTG
GCTGCCTATGCACCAATACACATTCAAGATAAAACTTGGGCCTTGGTCGTCGAGCTACCAGAAAAAGATGCGTATGCCCG
CGTACAACAACTGAAGCATATTTTCTACCTTGTGATGCTCGGCGGGATCATCGTTGTCTTTGTTTGTTCTCATTATCTTT
CAAACTTTATAACGCTCCCTCTTCTCAAGCTGACTTGGGTCGCAGAACGTGTCTCTGCTGGAGATTTATCGCAAGAGATC
GTCAATATCGACCGCAAAGACGAAATTGGCAGGCTCGCCACCAGCTTTACGCGGATGCAGCGCTCTATCAAAGAGAAAAT
AGAGTTAATTGGCGCGCAAAATACTAAGTTAGAAGACAATATCAAAATAATTCGCCAACAAAACGATGAGCTGCATTTAG
CCAATAAATTAAAAGATGAGTTTTTGGCGACCACCTCGCATGAGTTAAGAACGCCATTACATGGGATGGTGGGAATAGCA
GAAGCTCTGAACTCAGGTGCCAATGGCCCAATTCCAGCACATCAAAGACACCAACTTTCGATTATTATTAATAGTGGACA
ACGATTAGCCACCTTAGTCGATGACCTATTGGACTATCATAAAATGCGTTATGGCAATTTAGATATCCAAACGACTACCG
TCGATCTCGCAGCCACTACCCAGTTAGTTTTAGAGCTCTCTAAGCACCTATTAGGGGAGAAGCCAATACGTATCATCAAC
CAAATTCCAGCCGAGTTACCGCTCGTCTTAGCCGACGCGCAACGCTTAGAACAAGTGCTGTACAATTTGATTGGCAATGC
GATTAAATACACCTCTGAAGGTAAAATTATTATCTCGGCAACCATGCTTGAGAAAAAGATCCGCATTCAAGTGGTGGATA
CCGGTCAAGGGATCCCATCTGATCAGTTAGAGCATATTTTTGAACCTTTAATTCAAGCCGGGCAAGATTCCAGTCGTTAT
CGCCAAGGCGCAGGACTGGGGTTATCTATCAGCCGTCAATTAATTGAATTAATGGGAGGCACTTTATACGTCAGTAGCCA
ACCATTCGTCGGTACCACCTTTAGTTTTTCTTTAGCCATTGCTAGCGAAGAGGATATTCAAGCTCACCAAACAGACACGG
TCCAAACTCACTTCCAAGCACCTGAAGTGACCTCTTTTATCAATAATGAAGATGACTCTTTACCACAAAATCCAGATGGC
CCATTACTGATTGTGGCTGATGATGAACCTGTTAACTTACAGATCCTCGACAGTTTTTTACGCTTAGAAGGTTATCGAGT
CAAAACCGCCGTCGATGGTATCCAAGCCTTAGCCCTGATTGAAGAAGAAAAACCAGAATTATTACTATTAGATATCATGA
TGCCGGGCCTCAATGGCTATGAAGTCTGTCAAGATGTCCGTAAACACTATGATCACGGCCAATTACCCATCATTCTATTA
ACAGCCTTAAGTCAAACCAATGACCGCATTAAAGGCTTTGATGTCGGGGCGAATGATTACTTAAATAAACCCTTTAACAA
GCAAGAGCTGGCAGCACGAATACGCGCTCATTTAACCGCAAGTAAAGCCGAGTTACGTCGTATTGAAAATGCACAGTTAC
AACAAGAGTTACGTATTCGAGAGCAAGTGGAAGCCAGCTTACTTGAGACACAAGGACGTCTACTTGAGCAATTAGAATCA
GCACCAGAAGCCATTATTTGTTTAAGAGAAGACGGTCGAATTCGTTTTGCCAATGATTCAGCCGCCAAACTATTTAAACG
AACCCCTGAACAACTTAAACGTTCTCAAGGTGATGAAATCATTGCGCCTAAATACTTGAGCATGACCCAAGAGCACTATT
GTGGTGACATTGATATTTTTGTCGACGACAGACGAGAACATATCACCTGTGACGTTTTAACCTTACCTGAAGGATCTGGG
TTAAAATATATGTACATCTTCAATATTGGTGGTGGGATCAATGCACAACGGATAGACAACCTGGAAACCGCAATTGAAGC
CTTATCCAGTTATGCCTTTGAAGGTGATAAAAACAAATTACAACAATTGAAAGAACTTGGCGGGGAGTTCACTCGACTGG
CCGATAAAGTCGCTCATAAAAGTGAAGACAAACAACAAGTCATGCGAGAAATACTGGTCGATACCATGAATACCGCTTTA
GACTATTGGGAATCCGATACTGGGCAAACCAAATTTACTCTCGCTGAACAAAGTGGATTATGGCGTGTGTACCTTGACCG
AAGCACACTCCAGACTCGTACTCTAGATAAATACTTACGTATTGAAACCCTACCCAAAACACCAAGGTGGCGTACCGTAT
TAAATACCATAGATTACATACTTGAACACACCTCTCTTGATAACAGCCAACGCCAACATTTACTTTGTTGTCGTGAAAAG
TTACAAACCTTACTCACCAGCTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (572-678)

• Response regulator receiver domain (Response_reg) (724-835)

• PAS fold (PAS) (875-913)

• His Kinase A (phospho-acceptor) domain (HisKA) (458-523)

• HAMP domain (HAMP) (373-424)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	68.584	100	0.688