Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PCS82_RS22425 Genome accession   NZ_CP115376
Coordinates   4645151..4645756 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CUVET20-PYO4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4640151..4650756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS82_RS22395 (PCS82_22345) rsmS 4640853..4641017 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  PCS82_RS22400 (PCS82_22350) priC 4641031..4641558 (-) 528 WP_022645282.1 primosomal replication protein N'' -
  PCS82_RS22405 (PCS82_22355) ybaN 4641628..4642005 (+) 378 WP_022645283.1 DUF454 family protein -
  PCS82_RS22410 (PCS82_22360) apt 4642158..4642709 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PCS82_RS22415 (PCS82_22365) dnaX 4642838..4644769 (+) 1932 WP_022645284.1 DNA polymerase III subunit gamma/tau -
  PCS82_RS22420 (PCS82_22370) ybaB 4644822..4645151 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PCS82_RS22425 (PCS82_22375) recR 4645151..4645756 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PCS82_RS22430 (PCS82_22380) htpG 4645866..4647740 (+) 1875 WP_022645285.1 molecular chaperone HtpG -
  PCS82_RS22435 (PCS82_22385) adk 4647921..4648565 (+) 645 WP_001220233.1 adenylate kinase -
  PCS82_RS22440 (PCS82_22390) hemH 4648697..4649659 (+) 963 WP_001250117.1 ferrochelatase -
  PCS82_RS22445 (PCS82_22395) aes 4649656..4650615 (-) 960 WP_001357009.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=704057 PCS82_RS22425 WP_001195025.1 4645151..4645756(+) (recR) [Escherichia coli strain CUVET20-PYO4]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=704057 PCS82_RS22425 WP_001195025.1 4645151..4645756(+) (recR) [Escherichia coli strain CUVET20-PYO4]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACATTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443