Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PCS82_RS16065 Genome accession   NZ_CP115376
Coordinates   3331000..3331992 (+) Length   330 a.a.
NCBI ID   WP_022646319.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET20-PYO4     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3326000..3336992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS82_RS16040 (PCS82_16005) rbsD 3326124..3326543 (+) 420 WP_000715936.1 D-ribose pyranase -
  PCS82_RS16045 (PCS82_16010) rbsA 3326551..3328056 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  PCS82_RS16050 (PCS82_16015) rbsC 3328061..3329026 (+) 966 WP_022646318.1 ribose ABC transporter permease -
  PCS82_RS16055 (PCS82_16020) rbsB 3329051..3329941 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  PCS82_RS16060 (PCS82_16025) rbsK 3330067..3330996 (+) 930 WP_001361791.1 ribokinase -
  PCS82_RS16065 (PCS82_16030) cytR 3331000..3331992 (+) 993 WP_022646319.1 ribose operon transcriptional repressor RbsR Regulator
  PCS82_RS16070 (PCS82_16035) mdtD 3331958..3333385 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  PCS82_RS16075 (PCS82_16040) yieP 3333408..3334100 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36597.88 Da        Isoelectric Point: 5.2098

>NTDB_id=704032 PCS82_RS16065 WP_022646319.1 3331000..3331992(+) (cytR) [Escherichia coli strain CUVET20-PYO4]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVDAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=704032 PCS82_RS16065 WP_022646319.1 3331000..3331992(+) (cytR) [Escherichia coli strain CUVET20-PYO4]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGATGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361