Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   VCA1004_RS08595 Genome accession   NZ_AP018689
Coordinates   1890134..1891105 (-) Length   323 a.a.
NCBI ID   WP_086983098.1    Uniprot ID   -
Organism   Vibrio aphrogenes strain CA-1004     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1885134..1896105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1004_RS08585 - 1885329..1887215 (+) 1887 WP_086983100.1 TRAP transporter fused permease subunit -
  VCA1004_RS08590 mutS 1887401..1889953 (+) 2553 WP_086984636.1 DNA mismatch repair protein MutS -
  VCA1004_RS08595 rpoS 1890134..1891105 (-) 972 WP_086983098.1 RNA polymerase sigma factor RpoS Regulator
  VCA1004_RS08600 - 1891176..1891979 (-) 804 WP_086983096.1 peptidoglycan DD-metalloendopeptidase family protein -
  VCA1004_RS08605 - 1892000..1892626 (-) 627 WP_086983094.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  VCA1004_RS08610 surE 1892645..1893388 (-) 744 WP_086983092.1 5'/3'-nucleotidase SurE -
  VCA1004_RS08615 truD 1893418..1894473 (-) 1056 WP_086983090.1 tRNA pseudouridine(13) synthase TruD -
  VCA1004_RS08620 ispF 1894495..1894971 (-) 477 WP_086983088.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  VCA1004_RS08625 ispD 1894990..1895706 (-) 717 WP_086983086.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  VCA1004_RS08630 ftsB 1895703..1896020 (-) 318 WP_086983084.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 37053.97 Da        Isoelectric Point: 4.5563

>NTDB_id=70402 VCA1004_RS08595 WP_086983098.1 1890134..1891105(-) (rpoS) [Vibrio aphrogenes strain CA-1004]
MSISNAVTKLNDIDDSEFDVDAIDTEETSQKNEVKEEYEVSAKTLDATQLYLSEIGFSPLLTAEEEVLYARRALRGDAAA
RKRMIESNLRLVVKISRRYNSRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIH
VVKELNIYLRTARELAQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNADPEVST
QDNDIKSSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLSMESLFDA
DYE

Nucleotide


Download         Length: 972 bp        

>NTDB_id=70402 VCA1004_RS08595 WP_086983098.1 1890134..1891105(-) (rpoS) [Vibrio aphrogenes strain CA-1004]
ATGAGTATCAGCAATGCAGTAACTAAATTGAACGACATTGACGATTCAGAATTTGATGTCGATGCAATAGACACGGAAGA
AACATCGCAAAAAAATGAGGTTAAAGAAGAGTATGAAGTCTCGGCTAAAACCCTTGATGCGACTCAACTTTATCTTAGTG
AAATAGGCTTCTCACCTCTTCTTACCGCAGAAGAAGAGGTCCTCTATGCACGTCGAGCATTGCGTGGTGATGCTGCAGCC
CGTAAGCGTATGATCGAAAGTAATTTACGTTTAGTAGTGAAAATCTCTCGTCGCTATAATAGCCGTGGCTTAGCACTTCT
TGATCTCATTGAAGAAGGTAACTTAGGCCTGATTCGAGCAGTAGAGAAGTTCGATCCTGAGCGTGGATTCCGCTTTTCTA
CTTATGCAACGTGGTGGATTCGTCAAACCATCGAACGCGCTTTAATGAATCAAACACGCACCATTAGGTTGCCTATCCAT
GTGGTGAAAGAGCTTAATATTTATTTGCGTACGGCCCGTGAGTTAGCACAAAAGCTAGATCATGAACCTACAGCAGAAGA
AATTGCGTTCCAATTAGATAAGCCAGTTGAAGATGTCAGTAAGATGTTGCGTCTTAATGAGCGAGTTAGTTCTGTCGATA
CTCCGATTGGTGGTGATGGTGAAAAAGCCTTACTGGATATTATTCCTGATATTAATAATGCCGATCCGGAAGTTTCCACT
CAAGATAATGATATTAAGTCTTCTTTAATCGATTGGTTGGATGAATTGAACCCGAAACAAAAAGAAGTGCTTGCGCGTCG
CTTTGGTCTTTTAGGCTATGAACCCTCCACTTTAGAAGAAGTGGGTCGTGAAATTAATTTAACTCGTGAACGTGTGCGTC
AGATCCAAGTAGAAGGTTTACGTCGTTTAAGAGAGATTTTAATGAAACAAGGGTTAAGCATGGAATCTTTATTTGATGCC
GATTACGAATGA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(252-305)

Sigma-70 region 2 (Sigma70_r2)

(84-153)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(46-78)

Sigma-70 region 3 (Sigma70_r3)

(164-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80.539

100

0.833

Multiple sequence alignment