Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VCA1004_RS08490 Genome accession   NZ_AP018689
Coordinates   1870481..1870999 (-) Length   172 a.a.
NCBI ID   WP_086983120.1    Uniprot ID   -
Organism   Vibrio aphrogenes strain CA-1004     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1865481..1875999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1004_RS08470 rpsP 1865776..1866024 (-) 249 WP_027697617.1 30S ribosomal protein S16 -
  VCA1004_RS08475 ffh 1866375..1867754 (-) 1380 WP_086983126.1 signal recognition particle protein -
  VCA1004_RS08480 - 1868128..1868922 (+) 795 WP_086983124.1 inner membrane protein YpjD -
  VCA1004_RS08485 - 1869041..1870324 (+) 1284 WP_086983122.1 HlyC/CorC family transporter -
  VCA1004_RS08490 luxS 1870481..1870999 (-) 519 WP_086983120.1 S-ribosylhomocysteine lyase Regulator
  VCA1004_RS08495 gshA 1871225..1872796 (-) 1572 WP_086983118.1 glutamate--cysteine ligase -
  VCA1004_RS08500 - 1872963..1875812 (-) 2850 WP_086983116.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19172.96 Da        Isoelectric Point: 4.6785

>NTDB_id=70399 VCA1004_RS08490 WP_086983120.1 1870481..1870999(-) (luxS) [Vibrio aphrogenes strain CA-1004]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFCMPNKSILSEKGIHTLEHLYAGFMRAHLNGSEVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLKVEDQNKIPELNEYQCGTYSMHSLQEAQEIAQQIISAGISVNKNDELA
LPESMLQELKVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=70399 VCA1004_RS08490 WP_086983120.1 1870481..1870999(-) (luxS) [Vibrio aphrogenes strain CA-1004]
ATGCCTCTATTAGATAGTTTTACCGTTGATCATACTCGCATGAATGCACCAGCGGTGCGTGTTGCCAAAACAATGCAAAC
ACCAAAAGGGGATACAATTACTGTTTTTGATTTGCGTTTTTGTATGCCTAACAAAAGCATCTTATCTGAAAAAGGGATTC
ATACTTTAGAGCATCTTTACGCTGGATTTATGCGTGCTCATTTGAATGGTTCTGAAGTTGAAATTATTGATATTTCACCA
ATGGGTTGTCGTACAGGTTTTTACATGAGCCTAATTGGGACTCCGAGTGAGCAACAAGTAGCGGACGCTTGGTTAGCGGC
GATGCAAGATGTGTTAAAAGTAGAAGATCAAAATAAGATCCCTGAGCTAAATGAATACCAATGTGGTACTTATTCCATGC
ACTCATTGCAGGAAGCTCAAGAGATTGCTCAGCAAATTATTAGTGCGGGTATCAGTGTTAATAAGAATGATGAGCTGGCT
TTACCAGAAAGCATGCTGCAAGAACTTAAAGTCAATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.628

100

0.866

Multiple sequence alignment