Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VCA1004_RS01215 Genome accession   NZ_AP018689
Coordinates   261412..262044 (-) Length   210 a.a.
NCBI ID   WP_086982043.1    Uniprot ID   -
Organism   Vibrio aphrogenes strain CA-1004     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 256412..267044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1004_RS01190 - 257031..257897 (-) 867 WP_086982040.1 YicC/YloC family endoribonuclease -
  VCA1004_RS01195 rph 258085..258801 (+) 717 WP_086984593.1 ribonuclease PH -
  VCA1004_RS01200 pyrE 258940..259581 (+) 642 WP_086982041.1 orotate phosphoribosyltransferase -
  VCA1004_RS01205 - 259803..261008 (+) 1206 WP_086982042.1 aromatic amino acid transport family protein -
  VCA1004_RS01215 crp 261412..262044 (-) 633 WP_086982043.1 cAMP-activated global transcriptional regulator CRP Regulator
  VCA1004_RS01220 - 262286..263155 (-) 870 WP_086982044.1 phosphoribulokinase -
  VCA1004_RS01225 - 263236..263451 (-) 216 WP_086982045.1 YheU family protein -
  VCA1004_RS01230 - 263478..263939 (-) 462 WP_086982046.1 TIGR02444 family protein -
  VCA1004_RS01235 - 263941..265848 (-) 1908 WP_086982047.1 ABC transporter ATP-binding protein -
  VCA1004_RS01240 kefG 266135..266746 (+) 612 WP_086982048.1 glutathione-regulated potassium-efflux system ancillary protein KefG -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23637.46 Da        Isoelectric Point: 7.8383

>NTDB_id=70389 VCA1004_RS01215 WP_086982043.1 261412..262044(-) (crp) [Vibrio aphrogenes strain CA-1004]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMAKRLQITSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=70389 VCA1004_RS01215 WP_086982043.1 261412..262044(-) (crp) [Vibrio aphrogenes strain CA-1004]
ATGGTTCTAGGTAAACCTCAAACTGACCCAACATTAGAGTGGTTTCTATCGCACTGTCATATCCATAAGTACCCATCAAA
AAGTACTTTGATTCACGCCGGTGAGAAAGCAGAAACTCTGTATTACATCGTGAAGGGTTCAGTGGCTGTATTAATCAAAG
ATGAAGAAGGCAAAGAGATGATTTTGTCTTACTTGAACCAAGGTGACTTCATTGGCGAATTAGGCCTATTTGAAGAAGAC
CAAGAGCGTACCGCTTGGGTCCGTGCAAAATCACCTTGTGAAGTCGCTGAAATTTCATTTAAGAAATTCCGCCAACTTAT
CCAAGTGAATCCAGATATCTTAATGCGTCTTTCTGGTCAAATGGCTAAACGCCTACAGATTACTAGCCAGAAAGTGGGTG
ACTTAGCTTTCCTAGACGTAACGGGTCGTATCGCTCAAACTCTGTTGAACTTAGCGAAACAACCTGATGCGATGACTCAC
CCTGATGGTATGCAAATCAAGATCACTCGCCAAGAAATTGGTCAAATTGTTGGCTGTTCACGCGAAACTGTTGGCCGTAT
CTTGAAGATGCTAGAAGAGCAAAATCTGATTTCAGCTCACGGTAAAACCATCGTCGTTTACGGTACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment