Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PCS91_RS16255 Genome accession   NZ_CP115365
Coordinates   3340464..3341069 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CUVET19-1426     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3335464..3346069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS91_RS16235 (PCS91_16205) aes 3335605..3336564 (+) 960 WP_000801838.1 acetyl esterase -
  PCS91_RS16240 (PCS91_16210) hemH 3336561..3337523 (-) 963 WP_001250120.1 ferrochelatase -
  PCS91_RS16245 (PCS91_16215) adk 3337655..3338299 (-) 645 WP_001345715.1 adenylate kinase -
  PCS91_RS16250 (PCS91_16220) htpG 3338480..3340354 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PCS91_RS16255 (PCS91_16225) recR 3340464..3341069 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PCS91_RS16260 (PCS91_16230) ybaB 3341069..3341398 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PCS91_RS16265 (PCS91_16235) dnaX 3341451..3343382 (-) 1932 WP_166488254.1 DNA polymerase III subunit gamma/tau -
  PCS91_RS16270 (PCS91_16240) apt 3343511..3344062 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PCS91_RS16275 (PCS91_16245) ybaN 3344215..3344592 (-) 378 WP_001188905.1 DUF454 family protein -
  PCS91_RS16280 (PCS91_16250) priC 3344662..3345189 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  PCS91_RS16285 (PCS91_16255) rsmS 3345203..3345364 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=703869 PCS91_RS16255 WP_001195025.1 3340464..3341069(-) (recR) [Escherichia coli strain CUVET19-1426]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=703869 PCS91_RS16255 WP_001195025.1 3340464..3341069(-) (recR) [Escherichia coli strain CUVET19-1426]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443