Detailed information NTG0703758

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCS92_RS04855
• Genome accession: NZ_CP115361
• Coordinates: 998091..999083 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUVET20-1667
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 993091..1004083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCS92_RS04825 (PCS92_04820)	ispD	993213..993862 (+)	650	Protein_943	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PCS92_RS04830 (PCS92_04825)	ispF	993862..994341 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCS92_RS04835 (PCS92_04830)	truD	994338..995387 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PCS92_RS04840 (PCS92_04835)	surE	995368..996129 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PCS92_RS04845 (PCS92_04840)	pcm	996123..996749 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PCS92_RS04850 (PCS92_04845)	nlpD	996934..998028 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PCS92_RS04855 (PCS92_04850)	rpoS	998091..999083 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PCS92_RS04860 (PCS92_04855)	ygbN	999177..1000541 (-)	1365	WP_049254918.1	GntP family transporter	-
PCS92_RS04865 (PCS92_04860)	ygbM	1000630..1001406 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PCS92_RS04870 (PCS92_04865)	ygbL	1001411..1002049 (-)	639	WP_001278994.1	aldolase	-
PCS92_RS04875 (PCS92_04870)	otnK	1002046..1003308 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=703758 PCS92_RS04855 WP_000081550.1 998091..999083(+) (rpoS) [Escherichia coli strain CUVET20-1667]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=703758 PCS92_RS04855 WP_000081550.1 998091..999083(+) (rpoS) [Escherichia coli strain CUVET20-1667]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715