Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PCS84_RS04170 Genome accession   NZ_CP115358
Coordinates   863965..865197 (-) Length   410 a.a.
NCBI ID   WP_029701471.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET19-1704     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 858965..870197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS84_RS04155 (PCS84_04155) - 859937..861127 (+) 1191 WP_001542353.1 CDP-glycerol glycerophosphotransferase family protein -
  PCS84_RS04160 (PCS84_04160) - 861165..862322 (+) 1158 WP_029701469.1 M48 family metallopeptidase -
  PCS84_RS04165 (PCS84_04165) - 862735..863703 (+) 969 WP_375144356.1 hypothetical protein -
  PCS84_RS04170 (PCS84_04170) kpsS 863965..865197 (-) 1233 WP_029701471.1 capsule biosynthesis protein Regulator
  PCS84_RS04175 (PCS84_04175) - 865232..867259 (-) 2028 WP_029701472.1 capsular polysaccharide biosynthesis protein -
  PCS84_RS04180 (PCS84_04180) kdsB 867256..867996 (-) 741 WP_001604840.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCS84_RS04185 (PCS84_04185) - 868006..869682 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48876.46 Da        Isoelectric Point: 9.9544

>NTDB_id=703676 PCS84_RS04170 WP_029701471.1 863965..865197(-) (kpsS) [Escherichia coli strain CUVET19-1704]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLQRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMVFNKIKLD
EYFQSVSCQV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=703676 PCS84_RS04170 WP_029701471.1 863965..865197(-) (kpsS) [Escherichia coli strain CUVET19-1704]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGCTGCGAGATCTCCAACGACAATATGAC
TTTGATACCATCCTCTGTTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAACAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTACGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCAATGCCGGAATTATTACGCCACGCAAAAGCAGTAGTG
ACAATTAACAGTACGGCAGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGGTTTTTAACAAGATAAAACTGGAT
GAATATTTTCAGAGCGTGTCGTGTCAAGTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

96.585

0.383