Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VRUMOI_RS03515 Genome accession   NZ_AP018685
Coordinates   763845..764363 (+) Length   172 a.a.
NCBI ID   WP_089137590.1    Uniprot ID   -
Organism   Vibrio rumoiensis strain FERM P-14531     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 758845..769363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRUMOI_RS03505 gshA 761631..763202 (+) 1572 WP_089137628.1 glutamate--cysteine ligase -
  VRUMOI_RS03510 - 763204..763812 (+) 609 WP_089137591.1 hypothetical protein -
  VRUMOI_RS03515 luxS 763845..764363 (+) 519 WP_089137590.1 S-ribosylhomocysteine lyase Regulator
  VRUMOI_RS03520 - 764532..765815 (-) 1284 WP_089137589.1 HlyC/CorC family transporter -
  VRUMOI_RS03525 - 765939..766733 (-) 795 WP_089137627.1 inner membrane protein YpjD -
  VRUMOI_RS03530 ffh 767045..768424 (+) 1380 WP_089137588.1 signal recognition particle protein -
  VRUMOI_RS03535 rpsP 768826..769074 (+) 249 WP_027697617.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19178.96 Da        Isoelectric Point: 4.6799

>NTDB_id=70361 VRUMOI_RS03515 WP_089137590.1 763845..764363(+) (luxS) [Vibrio rumoiensis strain FERM P-14531]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFCIPNKDILSEKGIHTLEHLYAGFMRAHLNGNNVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVIKVEDQNKIPELNEYQCGTYSMHSLNEAQDIAKNIIAAGIQVNKNDELA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=70361 VRUMOI_RS03515 WP_089137590.1 763845..764363(+) (luxS) [Vibrio rumoiensis strain FERM P-14531]
ATGCCTTTACTAGATAGTTTTACCGTTGATCATACTCGTATGAACGCTCCAGCGGTTCGTGTTGCAAAGACAATGCAAAC
GCCAAAAGGCGATACGATCACTGTGTTTGATTTACGCTTTTGCATCCCGAACAAAGATATTTTATCTGAGAAAGGGATCC
ATACGTTAGAGCACTTATACGCCGGTTTCATGCGCGCACACTTAAATGGTAACAACGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGCACTGGCTTTTACATGAGCTTAATTGGCACCCCAAGCGAACAACAAGTTGCTGATGCATGGCTAGCGGC
GATGCAAGATGTGATAAAAGTGGAAGACCAAAATAAGATCCCTGAGCTAAATGAATATCAGTGCGGTACTTATTCAATGC
ACTCTTTAAATGAAGCGCAAGATATCGCGAAAAACATCATTGCTGCAGGCATTCAAGTGAACAAAAATGATGAACTTGCG
TTACCAGAAAGCATGCTACAAGAGCTTAAAGTAGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment