Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VRUMOI_RS02350 Genome accession   NZ_AP018685
Coordinates   518330..519331 (+) Length   333 a.a.
NCBI ID   WP_089138276.1    Uniprot ID   -
Organism   Vibrio rumoiensis strain FERM P-14531     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 513330..524331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRUMOI_RS02330 - 513346..514317 (-) 972 WP_089138280.1 ABC transporter permease -
  VRUMOI_RS02335 - 514314..515846 (-) 1533 WP_089138279.1 sugar ABC transporter ATP-binding protein -
  VRUMOI_RS02340 - 515833..517002 (-) 1170 WP_089138278.1 Gfo/Idh/MocA family protein -
  VRUMOI_RS02345 - 517013..518065 (-) 1053 WP_089138277.1 sugar phosphate isomerase/epimerase -
  VRUMOI_RS02350 cytR 518330..519331 (+) 1002 WP_089138276.1 LacI family DNA-binding transcriptional regulator Regulator
  VRUMOI_RS02355 xylF 519496..520494 (+) 999 WP_089138275.1 D-xylose ABC transporter substrate-binding protein -
  VRUMOI_RS02360 - 520549..522078 (+) 1530 WP_089138274.1 xylose ABC transporter ATP-binding protein -
  VRUMOI_RS02365 - 522075..523253 (+) 1179 WP_089138273.1 sugar ABC transporter permease -
  VRUMOI_RS02370 ribB 523654..524316 (+) 663 WP_089138272.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36095.67 Da        Isoelectric Point: 6.7118

>NTDB_id=70355 VRUMOI_RS02350 WP_089138276.1 518330..519331(+) (cytR) [Vibrio rumoiensis strain FERM P-14531]
MPTIKDVARIAGVSTATVSRAMITPDKVSEKTRLKVEVAIAESGFSPNVMARNLRRSESKTVVVIVPDIANMFFANVVRG
IQSVALREGYKVLLGDSIHTIEQAKVYLDLVSSKQADGIISLTAELPQEVRQGASIPMVMACEYFANFSIPTIRIDNQLA
AQRAVEYLISIGHRNIGCISGPLNNPLCIARREGYLQALQQANISSDVQAIEEGDFSFQSGYSAFMNLSNLDGMSALFCF
SDIMALGAMKAATQLGLKVPEDLSIVGFDDLALAEYASPALTTVRQPQEEIGQTAMKIMLKRLKGSKVSHDTVLATQLLV
RDSTAPPRFFTSS

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=70355 VRUMOI_RS02350 WP_089138276.1 518330..519331(+) (cytR) [Vibrio rumoiensis strain FERM P-14531]
ATGCCAACCATTAAAGATGTTGCTCGAATCGCGGGGGTGTCTACCGCAACGGTATCGAGAGCGATGATCACTCCGGATAA
AGTGTCAGAAAAAACACGCTTGAAAGTAGAAGTGGCGATTGCTGAATCGGGTTTTTCTCCGAATGTCATGGCTAGAAATT
TGCGACGTAGTGAATCTAAAACGGTTGTTGTGATTGTGCCTGATATTGCCAATATGTTTTTTGCGAATGTGGTAAGAGGG
ATTCAATCGGTTGCCCTACGCGAGGGATATAAAGTTCTCTTGGGCGATTCTATTCATACCATTGAACAGGCAAAAGTCTA
TTTAGATTTAGTCAGCAGTAAGCAAGCCGATGGCATCATTTCACTCACCGCAGAGTTACCACAAGAGGTTCGTCAGGGCG
CTTCGATACCGATGGTCATGGCGTGTGAATACTTTGCTAACTTTTCGATTCCTACCATTCGAATTGATAATCAACTGGCA
GCCCAAAGAGCGGTTGAATATCTCATTAGCATTGGGCATCGCAATATTGGTTGTATTTCAGGGCCATTAAACAATCCATT
GTGTATCGCGCGTAGAGAAGGGTATTTACAAGCTTTGCAGCAAGCAAATATTTCTTCTGATGTTCAAGCGATTGAAGAAG
GCGATTTTAGCTTTCAATCTGGGTATTCCGCTTTTATGAATTTATCGAACCTTGATGGTATGAGCGCTTTGTTTTGTTTT
AGCGACATTATGGCGTTAGGGGCCATGAAGGCAGCCACACAGTTAGGGCTAAAAGTACCGGAAGATTTATCGATTGTGGG
ATTCGATGATCTCGCTTTGGCTGAATATGCCTCTCCAGCATTGACCACGGTTAGGCAACCGCAAGAAGAAATCGGTCAAA
CGGCCATGAAGATCATGCTAAAAAGATTAAAGGGAAGCAAGGTGAGCCATGATACCGTCCTCGCCACTCAATTGTTGGTC
CGAGACAGCACTGCACCACCACGTTTTTTTACTTCGAGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-324)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

50.15

100

0.502
  cytR Vibrio cholerae C6706

49.096

99.7

0.489

Multiple sequence alignment