Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VRUMOI_RS01065 Genome accession   NZ_AP018685
Coordinates   233960..234982 (-) Length   340 a.a.
NCBI ID   WP_331813018.1    Uniprot ID   -
Organism   Vibrio rumoiensis strain FERM P-14531     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 228960..239982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRUMOI_RS01040 rraA 229167..229697 (-) 531 WP_089139953.1 ribonuclease E activity regulator RraA -
  VRUMOI_RS01045 - 229826..230734 (-) 909 WP_089140075.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  VRUMOI_RS01050 hslU 230926..232263 (-) 1338 WP_089139954.1 HslU--HslV peptidase ATPase subunit -
  VRUMOI_RS01055 hslV 232372..232890 (-) 519 WP_089139955.1 ATP-dependent protease subunit HslV -
  VRUMOI_RS01060 - 233138..233713 (-) 576 WP_089139956.1 SPOR domain-containing protein -
  VRUMOI_RS01065 cytR 233960..234982 (-) 1023 WP_331813018.1 DNA-binding transcriptional regulator CytR Regulator
  VRUMOI_RS01070 priA 235216..237417 (-) 2202 WP_089139958.1 primosomal protein N' -
  VRUMOI_RS01075 rpmE 237690..237908 (+) 219 WP_089139959.1 50S ribosomal protein L31 -
  VRUMOI_RS01080 - 238069..239325 (+) 1257 WP_089139960.1 malic enzyme-like NAD(P)-binding protein -
  VRUMOI_RS01085 metJ 239454..239771 (-) 318 WP_089139961.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37454.00 Da        Isoelectric Point: 6.6393

>NTDB_id=70348 VRUMOI_RS01065 WP_331813018.1 233960..234982(-) (cytR) [Vibrio rumoiensis strain FERM P-14531]
MKRGKLMATMKEVAQLAGVSTATVSRALMNPEKVSNATRKRVEDAVLESGYSPNSLARNLRRNESKTIIVIVPDICDPYF
TEIIRGIEDTAAEHNYLVLLGDSGQQLKRESSFVNLVFTKQADGMLLLGTDVPFDVSKPEQKNLPPLVMACEYAPELELP
TVHIDNLTAAFDVVNYLTQMGHKKIAEMSGPSDASLCQFRHQGYQQALRRAGIDMNPAYQTQGDFTLESGVSAANKLLSL
PEPPTAIFCHNDSMAIGAIQQAKKQGFRIPQDLSIVGFDDIQFSQYCDPPLTTIAQPRYEIGKQSMLMLLEILKGREVRA
GSRLLEANLVIRNSAAPPRS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=70348 VRUMOI_RS01065 WP_331813018.1 233960..234982(-) (cytR) [Vibrio rumoiensis strain FERM P-14531]
GTGAAGAGAGGAAAACTTATGGCGACAATGAAGGAGGTTGCCCAACTAGCTGGGGTATCAACGGCGACGGTTTCCCGTGC
GCTGATGAATCCCGAGAAAGTCTCCAATGCAACACGAAAGCGCGTAGAAGATGCGGTATTAGAATCGGGCTACTCACCGA
ACTCTTTAGCACGCAATCTACGACGTAATGAATCGAAAACCATCATTGTAATTGTGCCCGACATCTGTGACCCTTATTTC
ACAGAGATCATCCGAGGCATCGAAGATACCGCCGCGGAACATAATTATTTAGTTCTACTGGGTGACAGCGGGCAGCAACT
CAAACGAGAAAGCAGCTTTGTGAATTTAGTCTTTACCAAGCAAGCTGATGGCATGTTGCTATTGGGTACCGATGTTCCTT
TTGACGTCAGTAAACCTGAACAAAAAAACTTACCGCCGCTTGTCATGGCCTGTGAATACGCGCCGGAACTAGAGCTTCCT
ACGGTTCATATTGACAATTTAACCGCCGCATTTGATGTCGTGAATTACCTCACCCAAATGGGACATAAGAAAATCGCTGA
AATGTCCGGTCCATCCGATGCATCACTTTGTCAATTCCGCCATCAAGGCTACCAACAAGCCTTGCGACGCGCTGGCATAG
ACATGAATCCGGCCTACCAAACACAAGGTGACTTTACTTTAGAGTCTGGTGTGAGTGCGGCGAATAAATTACTGTCTTTA
CCTGAGCCTCCAACCGCCATTTTTTGTCATAACGACAGCATGGCTATTGGCGCTATTCAACAAGCGAAAAAACAAGGTTT
CCGAATACCACAAGACCTTTCCATTGTTGGCTTTGACGACATTCAATTCTCTCAATACTGCGATCCGCCACTCACCACTA
TTGCTCAACCCCGTTATGAGATCGGTAAACAGTCAATGTTAATGTTGTTAGAAATATTAAAAGGGAGAGAGGTTCGTGCT
GGTTCTCGATTACTTGAAGCCAATCTTGTGATCAGAAATAGTGCTGCACCACCGCGAAGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

81.928

97.647

0.8
  cytR Vibrio parahaemolyticus RIMD 2210633

78.761

99.706

0.785

Multiple sequence alignment