Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NIL01_RS17260 Genome accession   NZ_CP100072
Coordinates   3498778..3499374 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain RJKP41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3493778..3504374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIL01_RS17245 (NIL01_17240) helD 3493986..3496040 (-) 2055 WP_020324408.1 DNA helicase IV -
  NIL01_RS17250 (NIL01_17245) - 3496165..3496611 (+) 447 WP_002898425.1 YccF domain-containing protein -
  NIL01_RS17255 (NIL01_17250) yccS 3496629..3498764 (+) 2136 WP_004147856.1 YccS family putative transporter -
  NIL01_RS17260 (NIL01_17255) sxy/tfoX 3498778..3499374 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  NIL01_RS17265 (NIL01_17260) sulA 3499723..3500232 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  NIL01_RS17270 (NIL01_17265) ompA 3500585..3501655 (+) 1071 WP_002898408.1 porin OmpA -
  NIL01_RS17275 (NIL01_17270) matP 3501787..3502239 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NIL01_RS17280 (NIL01_17275) - 3502425..3504182 (+) 1758 WP_020324406.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=703459 NIL01_RS17260 WP_004179217.1 3498778..3499374(-) (sxy/tfoX) [Klebsiella pneumoniae strain RJKP41]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=703459 NIL01_RS17260 WP_004179217.1 3498778..3499374(-) (sxy/tfoX) [Klebsiella pneumoniae strain RJKP41]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51