Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PCS81_RS06315 Genome accession   NZ_CP115342
Coordinates   1306259..1306996 (-) Length   245 a.a.
NCBI ID   WP_308400583.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET21-1780     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1301259..1311996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS81_RS06290 (PCS81_06285) tyrA 1301633..1302754 (+) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PCS81_RS06295 (PCS81_06290) pheA 1302797..1303957 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  PCS81_RS06300 (PCS81_06295) pheL 1304056..1304103 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PCS81_RS06305 (PCS81_06300) raiA 1304207..1304548 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PCS81_RS06310 (PCS81_06305) - 1304809..1306155 (-) 1347 WP_169052421.1 IS4-like element IS4 family transposase -
  PCS81_RS06315 (PCS81_06310) comL 1306259..1306996 (-) 738 WP_308400583.1 outer membrane protein assembly factor BamD Machinery gene
  PCS81_RS06320 (PCS81_06315) rluD 1307131..1308111 (+) 981 WP_022645998.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCS81_RS06325 (PCS81_06320) yfiH 1308108..1308839 (+) 732 WP_000040134.1 purine nucleoside phosphorylase YfiH -
  PCS81_RS06330 (PCS81_06325) clpC 1308969..1311542 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27786.37 Da        Isoelectric Point: 5.8432

>NTDB_id=703434 PCS81_RS06315 WP_308400583.1 1306259..1306996(-) (comL) [Escherichia coli strain CUVET21-1780]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKLLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=703434 PCS81_RS06315 WP_308400583.1 1306259..1306996(-) (comL) [Escherichia coli strain CUVET21-1780]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACTACTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371