Detailed information NTG0703410

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NHG72_RS11930
• Genome accession: NZ_CP100041
• Coordinates: 2464590..2465735 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain B3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2459590..2470735

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHG72_RS11905 (NHG72_11895)	-	2459873..2460306 (+)	434	Protein_2299	hypothetical protein	-
NHG72_RS11910 (NHG72_11900)	-	2460331..2462403 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
NHG72_RS11915 (NHG72_11905)	speE	2462603..2463433 (+)	831	WP_003151052.1	spermidine synthase	-
NHG72_RS11920 (NHG72_11910)	speB	2463492..2464364 (+)	873	WP_032875884.1	agmatinase	-
NHG72_RS11925 (NHG72_11915)	-	2464487..2464606 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
NHG72_RS11930 (NHG72_11920)	rapF	2464590..2465735 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
NHG72_RS11935 (NHG72_11925)	-	2465966..2467321 (+)	1356	WP_032875887.1	YncE family protein	-
NHG72_RS11940 (NHG72_11930)	-	2467361..2468737 (+)	1377	WP_032875890.1	YncE family protein	-
NHG72_RS11945 (NHG72_11935)	-	2468744..2469256 (-)	513	Protein_2307	bacteriocin biosynthesis protein AlbG	-
NHG72_RS11950 (NHG72_11940)	-	2469410..2469838 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=703410 NHG72_RS11930 WP_074534220.1 2464590..2465735(-) (rapF) [Bacillus velezensis strain B3]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=703410 NHG72_RS11930 WP_074534220.1 2464590..2465735(-) (rapF) [Bacillus velezensis strain B3]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541