Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | PCS96_RS21325 | Genome accession | NZ_CP115330 |
| Coordinates | 4429963..4430955 (+) | Length | 330 a.a. |
| NCBI ID | WP_000081550.1 | Uniprot ID | A0A370V765 |
| Organism | Escherichia coli strain CUVET16-394 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4424963..4435955
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCS96_RS21295 (PCS96_21240) | ispD | 4425024..4425734 (+) | 711 | WP_000246131.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| PCS96_RS21300 (PCS96_21245) | ispF | 4425734..4426213 (+) | 480 | WP_001219242.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| PCS96_RS21305 (PCS96_21250) | truD | 4426210..4427259 (+) | 1050 | WP_000568924.1 | tRNA pseudouridine(13) synthase TruD | - |
| PCS96_RS21310 (PCS96_21255) | surE | 4427240..4428001 (+) | 762 | WP_001295182.1 | 5'/3'-nucleotidase SurE | - |
| PCS96_RS21315 (PCS96_21260) | pcm | 4427995..4428621 (+) | 627 | WP_000254708.1 | protein-L-isoaspartate O-methyltransferase | - |
| PCS96_RS21320 (PCS96_21265) | nlpD | 4428806..4429900 (+) | 1095 | WP_306174120.1 | murein hydrolase activator NlpD | - |
| PCS96_RS21325 (PCS96_21270) | rpoS | 4429963..4430955 (+) | 993 | WP_000081550.1 | RNA polymerase sigma factor RpoS | Regulator |
| PCS96_RS21330 (PCS96_21275) | - | 4431076..4431483 (-) | 408 | WP_001208066.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| PCS96_RS21335 (PCS96_21280) | - | 4431630..4432223 (+) | 594 | WP_001237173.1 | non-oxidative hydroxyarylic acid decarboxylases subunit B | - |
| PCS96_RS21340 (PCS96_21285) | - | 4432223..4433650 (+) | 1428 | WP_001551547.1 | non-oxidative hydroxyarylic acid decarboxylases subunit C | - |
| PCS96_RS21345 (PCS96_21290) | - | 4433661..4433897 (+) | 237 | WP_000562982.1 | non-oxidative hydroxyarylic acid decarboxylases subunit D | - |
| PCS96_RS21350 (PCS96_21295) | ygbN | 4433936..4435300 (-) | 1365 | WP_000104457.1 | GntP family transporter | - |
Sequence
Protein
Download Length: 330 a.a. Molecular weight: 37972.84 Da Isoelectric Point: 4.5597
>NTDB_id=703398 PCS96_RS21325 WP_000081550.1 4429963..4430955(+) (rpoS) [Escherichia coli strain CUVET16-394]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
Nucleotide
Download Length: 993 bp
>NTDB_id=703398 PCS96_RS21325 WP_000081550.1 4429963..4430955(+) (rpoS) [Escherichia coli strain CUVET16-394]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
73.065 |
97.879 |
0.715 |