Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PCS96_RS19615 Genome accession   NZ_CP115330
Coordinates   4081803..4083020 (-) Length   405 a.a.
NCBI ID   WP_021523265.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET16-394     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4076803..4088020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS96_RS19600 (PCS96_19555) - 4077748..4078875 (+) 1128 WP_016231191.1 polysaccharide pyruvyl transferase family protein -
  PCS96_RS19605 (PCS96_19560) - 4079013..4080182 (+) 1170 WP_016231190.1 nucleotide sugar dehydrogenase -
  PCS96_RS19610 (PCS96_19565) - 4080311..4081651 (+) 1341 WP_016231189.1 glycosyltransferase family A protein -
  PCS96_RS19615 (PCS96_19570) kpsS 4081803..4083020 (-) 1218 WP_021523265.1 capsule biosynthesis protein Regulator
  PCS96_RS19620 (PCS96_19575) - 4083055..4085082 (-) 2028 WP_000579533.1 capsular polysaccharide biosynthesis protein -
  PCS96_RS19625 (PCS96_19580) kdsB 4085079..4085819 (-) 741 WP_000030757.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCS96_RS19630 (PCS96_19585) - 4085829..4087505 (-) 1677 WP_021523264.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 48449.20 Da        Isoelectric Point: 10.2265

>NTDB_id=703393 PCS96_RS19615 WP_021523265.1 4081803..4083020(-) (kpsS) [Escherichia coli strain CUVET16-394]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPWLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVIYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKKI
KKIKR

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=703393 PCS96_RS19615 WP_021523265.1 4081803..4083020(-) (kpsS) [Escherichia coli strain CUVET16-394]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGTGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATATACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAGATA
AAAAAGATAAAAAGATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.899

97.778

0.39