Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCS96_RS15885 Genome accession   NZ_CP115330
Coordinates   3296467..3297057 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain CUVET16-394     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3291467..3302057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS96_RS15870 (PCS96_15825) ilvN 3292722..3293012 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  PCS96_RS15875 (PCS96_15830) - 3294078..3294560 (+) 483 WP_073462037.1 hypothetical protein -
  PCS96_RS15880 (PCS96_15835) - 3294836..3296305 (+) 1470 WP_309172455.1 hypothetical protein -
  PCS96_RS15885 (PCS96_15840) letA 3296467..3297057 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  PCS96_RS15890 (PCS96_15845) uhpB 3297057..3298559 (+) 1503 WP_001551898.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  PCS96_RS15895 (PCS96_15850) uhpC 3298569..3299888 (+) 1320 WP_000936560.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  PCS96_RS15900 (PCS96_15855) uhpT 3300144..3301535 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=703376 PCS96_RS15885 WP_000633668.1 3296467..3297057(+) (letA) [Escherichia coli strain CUVET16-394]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=703376 PCS96_RS15885 WP_000633668.1 3296467..3297057(+) (letA) [Escherichia coli strain CUVET16-394]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGTTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378