Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NHG71_RS18420 Genome accession   NZ_CP100040
Coordinates   3718397..3719086 (+) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain B1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3713397..3724086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHG71_RS18395 (NHG71_18365) degS 3713680..3714843 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NHG71_RS18400 (NHG71_18370) degU 3714920..3715609 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NHG71_RS18405 (NHG71_18375) - 3715707..3716555 (+) 849 WP_032876160.1 DegV family protein -
  NHG71_RS18410 (NHG71_18380) comFA 3716664..3718049 (+) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  NHG71_RS18415 (NHG71_18385) - 3718107..3718391 (+) 285 WP_003151389.1 competence protein ComFB -
  NHG71_RS18420 (NHG71_18390) comFC 3718397..3719086 (+) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  NHG71_RS18425 (NHG71_18395) - 3719160..3719579 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NHG71_RS18430 (NHG71_18400) flgM 3719649..3719915 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NHG71_RS18435 (NHG71_18405) - 3719930..3720412 (+) 483 WP_032876168.1 flagellar protein FlgN -
  NHG71_RS18440 (NHG71_18410) flgK 3720428..3721945 (+) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  NHG71_RS18445 (NHG71_18415) flgL 3721957..3722874 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NHG71_RS18450 (NHG71_18420) - 3722965..3723534 (+) 570 WP_007407476.1 DUF6470 family protein -
  NHG71_RS18455 (NHG71_18425) fliW 3723564..3723995 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=703368 NHG71_RS18420 WP_196770545.1 3718397..3719086(+) (comFC) [Bacillus velezensis strain B1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=703368 NHG71_RS18420 WP_196770545.1 3718397..3719086(+) (comFC) [Bacillus velezensis strain B1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594