Detailed information NTG0703361

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NHG71_RS17445
• Genome accession: NZ_CP100040
• Coordinates: 3527100..3528245 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain B1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3522100..3533245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHG71_RS17420 (NHG71_17395)	-	3522383..3522816 (+)	434	Protein_3374	hypothetical protein	-
NHG71_RS17425 (NHG71_17400)	-	3522841..3524913 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
NHG71_RS17430 (NHG71_17405)	speE	3525113..3525943 (+)	831	WP_003151052.1	spermidine synthase	-
NHG71_RS17435 (NHG71_17410)	speB	3526002..3526874 (+)	873	WP_032875884.1	agmatinase	-
NHG71_RS17440 (NHG71_17415)	-	3526997..3527116 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
NHG71_RS17445 (NHG71_17420)	rapF	3527100..3528245 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
NHG71_RS17450 (NHG71_17425)	-	3528476..3529831 (+)	1356	WP_032875887.1	YncE family protein	-
NHG71_RS17455 (NHG71_17430)	-	3529871..3531247 (+)	1377	WP_032875890.1	YncE family protein	-
NHG71_RS17460 (NHG71_17435)	-	3531254..3531766 (-)	513	Protein_3382	bacteriocin biosynthesis protein AlbG	-
NHG71_RS17465 (NHG71_17440)	-	3531920..3532348 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=703361 NHG71_RS17445 WP_074534220.1 3527100..3528245(-) (rapF) [Bacillus velezensis strain B1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=703361 NHG71_RS17445 WP_074534220.1 3527100..3528245(-) (rapF) [Bacillus velezensis strain B1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541