Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   NHN23_RS04555 Genome accession   NZ_CP099990
Coordinates   960514..961230 (-) Length   238 a.a.
NCBI ID   WP_002507139.1    Uniprot ID   -
Organism   Staphylococcus equorum strain PU1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 955514..966230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHN23_RS04535 - 956601..956828 (+) 228 WP_002507135.1 sulfurtransferase TusA family protein -
  NHN23_RS04540 - 956972..957934 (+) 963 WP_021339966.1 LacI family DNA-binding transcriptional regulator -
  NHN23_RS04545 - 958027..959511 (+) 1485 WP_021339967.1 sucrose-6-phosphate hydrolase -
  NHN23_RS04550 - 959508..960476 (+) 969 WP_021339968.1 carbohydrate kinase -
  NHN23_RS04555 agrA 960514..961230 (-) 717 WP_002507139.1 quorum-sensing response regulator AgrA Regulator
  NHN23_RS04560 agrC 961243..962538 (-) 1296 WP_021339969.1 quorum-sensing sensor histidine kinase AgrC -
  NHN23_RS04565 agrD 962562..962699 (-) 138 WP_021339970.1 cyclic lactone autoinducer peptide AgrD -
  NHN23_RS04570 - 962702..963271 (-) 570 WP_021339971.1 accessory gene regulator AgrB -
  NHN23_RS04575 - 964030..964815 (-) 786 WP_021339973.1 carbon-nitrogen family hydrolase -
  NHN23_RS04580 - 965049..965678 (-) 630 WP_021339974.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27930.75 Da        Isoelectric Point: 4.9764

>NTDB_id=703269 NHN23_RS04555 WP_002507139.1 960514..961230(-) (agrA) [Staphylococcus equorum strain PU1]
MKIFICEDDERQRENMISIINNYIMIEEKPMEIEVATADPYEVLERSKDLSDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESTVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELNQLDDRFFRCHNSFVVNRHNIESIDSKSRIVYFKNQEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=703269 NHN23_RS04555 WP_002507139.1 960514..961230(-) (agrA) [Staphylococcus equorum strain PU1]
ATGAAGATATTCATATGTGAAGATGATGAAAGACAACGTGAGAATATGATTTCGATTATCAACAACTACATCATGATTGA
AGAGAAACCGATGGAAATTGAAGTTGCAACTGCCGATCCTTATGAAGTTTTAGAACGTTCTAAAGATTTAAGTGATATAG
GGTGTTACTTTTTAGATATACAATTGGAAGCCGACATTAACGGTATCAAGCTTGCTAGTGAAATTCGCAAGCACGATCCT
GTAGGTAATATCATTTTTGTTACAAGTCATAGCGAGCTTACATATCTTACTTTTGTTTATAAAGTAGCAGCGATGGACTT
TATTTTTAAAGATGATCCAGATGAATTAAAATCTAGAATCATTGATTGTTTAGAAACTTCAGAATCTAGGTTAAAATTAC
TTTCTAAAGAAAGCACTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCAGTATATGTTCAATATGATGATGTTATG
TTTTTTGAGTCCTCTACTAAATCTCATCGATTGATTGCGCACTTAGACAATAGACAAATTGAATTCTATGGTAACCTTAA
AGAACTTAACCAACTTGATGATAGATTCTTTAGATGTCATAACAGTTTCGTTGTTAACAGACATAATATTGAATCTATTG
ATTCAAAATCTCGCATTGTTTATTTCAAAAACCAAGAACATTGCTTTGCTTCAGTAAGAAATGTAAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866