Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VCASEI_RS09605 Genome accession   NZ_AP018680
Coordinates   2041249..2041767 (-) Length   172 a.a.
NCBI ID   WP_086962844.1    Uniprot ID   -
Organism   Vibrio casei strain DSM 22364     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2036249..2046767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS09590 ffh 2037173..2038552 (-) 1380 WP_086962838.1 signal recognition particle protein -
  VCASEI_RS09595 - 2038983..2039777 (+) 795 WP_162621063.1 inner membrane protein YpjD -
  VCASEI_RS09600 - 2039868..2041151 (+) 1284 WP_086962842.1 HlyC/CorC family transporter -
  VCASEI_RS09605 luxS 2041249..2041767 (-) 519 WP_086962844.1 S-ribosylhomocysteine lyase Regulator
  VCASEI_RS09610 - 2041809..2042423 (-) 615 WP_086962846.1 hypothetical protein -
  VCASEI_RS09615 gshA 2042427..2043998 (-) 1572 WP_086962848.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19113.92 Da        Isoelectric Point: 4.8117

>NTDB_id=70324 VCASEI_RS09605 WP_086962844.1 2041249..2041767(-) (luxS) [Vibrio casei strain DSM 22364]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFCIPNKNILSEKGIHTLEHLYAGFMRSHLNGSNVEIIDISP
MGCRTGFYMSLIGTPSEQQVADSWLAAMEDVLKVKDQNKIPELNEYQCGTYSMHSLTEAQEIAKDIIAAGISVNKNDDLA
LPDAMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=70324 VCASEI_RS09605 WP_086962844.1 2041249..2041767(-) (luxS) [Vibrio casei strain DSM 22364]
ATGCCTCTATTAGACAGTTTTACCGTTGACCACACACGTATGCAAGCACCTGCGGTACGTGTCGCGAAGACCATGCAAAC
ACCAAAAGGGGATACCATTACTGTATTCGATTTACGTTTTTGCATTCCCAATAAGAATATCTTGTCAGAAAAAGGCATCC
ATACTTTAGAGCATCTTTACGCTGGTTTTATGCGATCTCACTTGAATGGCTCAAATGTTGAGATTATTGATATTTCACCA
ATGGGTTGTCGTACTGGTTTTTATATGAGTTTGATCGGTACACCAAGTGAACAACAGGTTGCCGATTCTTGGTTAGCGGC
AATGGAAGATGTACTTAAAGTTAAAGATCAAAATAAAATCCCTGAATTGAATGAATACCAATGTGGTACTTATTCAATGC
ACTCTTTAACGGAAGCACAAGAGATCGCAAAAGACATTATCGCAGCAGGAATCAGCGTGAATAAGAATGATGACCTTGCG
CTACCAGATGCCATGTTGCAAGAGCTTAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

83.626

99.419

0.831

Multiple sequence alignment