Detailed information NTG0703207

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCS83_RS17810
• Genome accession: NZ_CP115320
• Coordinates: 3607209..3608201 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUVET18-565
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3602209..3613201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCS83_RS17790 (PCS83_17740)	ygbM	3602840..3603616 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
PCS83_RS17795 (PCS83_17745)	ygbN	3603705..3605069 (+)	1365	WP_000104433.1	GntP family transporter	-
PCS83_RS17800 (PCS83_17750)	-	3605212..3606255 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
PCS83_RS17805 (PCS83_17755)	-	3606480..3607031 (+)	552	WP_001179442.1	flavodoxin family protein	-
PCS83_RS17810 (PCS83_17760)	rpoS	3607209..3608201 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PCS83_RS17815 (PCS83_17765)	nlpD	3608264..3609358 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PCS83_RS17820 (PCS83_17770)	pcm	3609543..3610169 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
PCS83_RS17825 (PCS83_17775)	surE	3610163..3610924 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PCS83_RS17830 (PCS83_17780)	truD	3610905..3611954 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
PCS83_RS17835 (PCS83_17785)	ispF	3611951..3612430 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCS83_RS17840 (PCS83_17790)	ispD	3612430..3613140 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=703207 PCS83_RS17810 WP_000081550.1 3607209..3608201(-) (rpoS) [Escherichia coli strain CUVET18-565]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=703207 PCS83_RS17810 WP_000081550.1 3607209..3608201(-) (rpoS) [Escherichia coli strain CUVET18-565]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715