Detailed information NTG0703203

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: NG812_RS08080
• Genome accession: NZ_CP099987
• Coordinates: 1641828..1644080 (-)
• Length: 750 a.a.
• NCBI ID: WP_165706253.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain FUA009
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1636828..1649080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NG812_RS08055 (NG812_08025)	-	1637235..1637378 (-)	144	WP_197911528.1	adenine methyltransferase	-
NG812_RS08060 (NG812_08030)	uvrB	1637592..1639580 (-)	1989	WP_023889516.1	excinuclease ABC subunit UvrB	-
NG812_RS08065 (NG812_08035)	-	1639577..1640032 (-)	456	WP_165706256.1	RNA pyrophosphohydrolase	-
NG812_RS08070 (NG812_08040)	def	1640137..1640763 (+)	627	WP_014025302.1	peptide deformylase	-
NG812_RS08075 (NG812_08045)	-	1641055..1641675 (-)	621	WP_270252904.1	hypothetical protein	-
NG812_RS08080 (NG812_08050)	clpC	1641828..1644080 (-)	2253	WP_165706253.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
NG812_RS08085 (NG812_08055)	rpoD	1644301..1645683 (-)	1383	WP_003134202.1	RNA polymerase sigma factor RpoD	-
NG812_RS08090 (NG812_08060)	dnaG	1645719..1647605 (-)	1887	WP_165706252.1	DNA primase	-

Sequence

Protein

• Length: 750 a.a.
• Molecular weight: 83716.99 Da
• Isoelectric Point: 4.8270

>NTDB_id=703203 NG812_RS08080 WP_165706253.1 1641828..1644080(-) (clpC) [Lactococcus garvieae strain FUA009]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVVKEEKETKALKEPDEK

Nucleotide

• Length: 2253 bp

>NTDB_id=703203 NG812_RS08080 WP_165706253.1 1641828..1644080(-) (clpC) [Lactococcus garvieae strain FUA009]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCCGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATTGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTAGCCCAAAAAATCGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTTGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGATG
ATGTTATCCTCTTTATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGGGAAGGAAATATGGATGCCGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCGAAC
CGTTATATTCAAGACCGTTTCCTTCCTGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGTATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGTTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCTGGTC
AATTGACAGAACGTGTACGTCGTAACCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGACGGTCGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACAAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCTGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCGATTGCTGATTTTTATATTGAGCATCCTGAATATAAAGAATTACTGGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGTAAAAGAAGAAAAAGAAACTAAAGCTTTGAAAGAGCC
GGATGAAAAATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

• AAA lid domain (AAA_lid_9) (284-383)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• ATPase family associated with various cellular activities (AAA) (AAA) (146-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.425	99.2	0.857
clpE	Streptococcus mutans UA159	77.63	100	0.777
clpE	Streptococcus pneumoniae TIGR4	75.894	100	0.764
clpE	Streptococcus pneumoniae Rx1	75.894	100	0.764
clpE	Streptococcus pneumoniae D39	75.894	100	0.764
clpE	Streptococcus pneumoniae R6	75.894	100	0.764
clpC	Bacillus subtilis subsp. subtilis str. 168	53.13	83.067	0.441
clpC	Streptococcus pneumoniae D39	46.19	85.733	0.396
clpC	Streptococcus pneumoniae Rx1	46.19	85.733	0.396
clpC	Streptococcus pneumoniae TIGR4	46.034	85.733	0.395
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.798	81.733	0.391
clpC	Streptococcus mutans UA159	46.602	82.4	0.384
clpC	Streptococcus thermophilus LMD-9	45.847	83.467	0.383
clpC	Streptococcus thermophilus LMG 18311	45.484	82.667	0.376