Detailed information NTG0703178

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NG812_RS01110
• Genome accession: NZ_CP099987
• Coordinates: 203067..204428 (+)
• Length: 453 a.a.
• NCBI ID: WP_080567145.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain FUA009
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 198067..209428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NG812_RS01065 (NG812_01060)	-	198525..199247 (-)	723	WP_141921056.1	metal ABC transporter ATP-binding protein	-
NG812_RS01070 (NG812_01065)	-	199269..199712 (-)	444	WP_014024192.1	zinc-dependent MarR family transcriptional regulator	-
NG812_RS01075 (NG812_01070)	infA	199914..200132 (+)	219	WP_003133772.1	translation initiation factor IF-1	-
NG812_RS01080 (NG812_01075)	rpmJ	200186..200302 (+)	117	WP_014024193.1	50S ribosomal protein L36	-
NG812_RS01085 (NG812_01080)	rpsM	200320..200685 (+)	366	WP_003133773.1	30S ribosomal protein S13	-
NG812_RS01090 (NG812_01085)	rpsK	200703..201086 (+)	384	WP_003133774.1	30S ribosomal protein S11	-
NG812_RS01095 (NG812_01090)	-	201138..202076 (+)	939	WP_003133775.1	DNA-directed RNA polymerase subunit alpha	-
NG812_RS01100 (NG812_01095)	rplQ	202092..202472 (+)	381	WP_003133776.1	50S ribosomal protein L17	-
NG812_RS01110 (NG812_01105)	radA	203067..204428 (+)	1362	WP_080567145.1	DNA repair protein RadA	Machinery gene
NG812_RS01115 (NG812_01110)	-	204562..205638 (+)	1077	WP_165705519.1	PIN/TRAM domain-containing protein	-
NG812_RS01120 (NG812_01115)	-	205661..206290 (+)	630	WP_393187117.1	pyridoxamine 5'-phosphate oxidase family protein	-
NG812_RS01125 (NG812_01120)	ald	206478..207599 (+)	1122	WP_003133782.1	alanine dehydrogenase	-
NG812_RS01130 (NG812_01125)	-	207633..208127 (-)	495	WP_014024197.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49768.92 Da
• Isoelectric Point: 4.8676

>NTDB_id=703178 NG812_RS01110 WP_080567145.1 203067..204428(+) (radA) [Lactococcus garvieae strain FUA009]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVEVQEVKNQRVSLTGEHSKPMKLDQVELFDTPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGNGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEEPTDARECFIGEIGLTGEIR
RVTRMEQRLNEASKLGFQKVYAPKNSLAGVDIPENLEVVGVTTLSECLKKVFG

Nucleotide

• Length: 1362 bp

>NTDB_id=703178 NG812_RS01110 WP_080567145.1 203067..204428(+) (radA) [Lactococcus garvieae strain FUA009]
ATAGCTAAAAAAAAATCAACATTTCTTTGCCAGGAATGTGGCTACAAATCAGTAAAAAAACTCGGACGTTGTCCCAATTG
TGGTGCTTGGGGTTCCTTTGTTGAAGAAGTAGAAGTCCAAGAGGTAAAAAATCAGAGAGTGAGTCTGACAGGCGAGCACT
CTAAACCTATGAAGTTAGATCAGGTTGAACTTTTCGATACACCGCGTGTGGAAACCGATCTGGATGAGTTTAACCGCGTC
CTTGGAGGCGGTGTCGTTCCAGGAAGTCTTGTCCTTATTGGGGGGGATCCAGGGATTGGTAAATCTACTCTACTGCTTCA
AGTATCTACGCAACTTGCTTCAAGAGGGCGTGTACTTTATGTCAGTGGCGAGGAGTCGGCTCAACAAATTAAGCTGCGTG
CCGAGCGTTTGGGCGACATCGATACAGATTTTTACCTTTACGCCGAAACCAATATGCAAAGCATCCGAAATGAAGTTGAA
CGTCTACAGCCAGACTTTCTTATTGTAGATTCGATTCAAACTATCATGACGCCTGAAATCCAGAGTACTCAGGGTTCGGT
TAGTCAGGTGCGCGAGGTGACAGGAGAATTAATGCAGTTGGCCAAAACCAACGATATTGCGACCTTTATTGTCGGACATG
TCACTAAGGAAGGGCAACTTGCGGGGCCACGTATGTTGGAACATATGGTTGATACGGTCTTGTATTTTGAGGGAGAACGT
CAAAATACATTCCGAATTTTACGCGCGGTCAAAAACCGTTTTGGTTCAACAAATGAAATTGGGATTTTCGAGATGCAGGG
CAATGGTTTAGTGGAAGTGACCAACCCGAGTGAAGTTTTTCTTGAGGAGCGTTTGGAGGGCTCTACAGGCTCTGCTATCG
TCTGTGCGTTAGAAGGTACGCGTCCGATATTGGTTGAGATTCAAGCTTTGACAACGCCAACCATGTTTGGGAATGCCAAA
CGTACAACCTCTGGTTTGGACTTTAACCGTGTGAGCTTAATCATGGCAGTACTCGAAAAGCGTGCCGGTTTTCTTTTGCA
ACAACAAGATGCCTACTTAAAATCCGCAGGTGGTGTCAAGTTGGATGAACCAGCCATTGACTTAGCAGTCGCTGTAGCTA
TTGCTTCTAGCTACAAGGAAGAGCCGACAGATGCACGCGAATGCTTTATTGGCGAAATTGGCTTGACGGGTGAAATTCGT
CGTGTTACGCGGATGGAGCAACGTCTCAATGAAGCAAGCAAATTAGGGTTCCAAAAAGTTTACGCGCCTAAGAATAGCTT
GGCAGGCGTAGACATTCCAGAAAATTTGGAAGTGGTCGGTGTGACGACTTTATCAGAATGTTTGAAAAAAGTATTTGGCT
AA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (77-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (359-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	80.353	100	0.804
radA	Streptococcus pneumoniae D39	80.353	100	0.804
radA	Streptococcus pneumoniae R6	80.353	100	0.804
radA	Streptococcus pneumoniae TIGR4	80.353	100	0.804
radA	Streptococcus mitis NCTC 12261	80.353	100	0.804
radA	Streptococcus mitis SK321	80.353	100	0.804
radA	Bacillus subtilis subsp. subtilis str. 168	61.438	100	0.623