Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PCP34_RS24835 Genome accession   NZ_CP115299
Coordinates   5326111..5327136 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5321111..5332136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP34_RS24810 (PCP34_24795) aroE 5321313..5322137 (-) 825 WP_030047943.1 shikimate dehydrogenase -
  PCP34_RS24815 (PCP34_24800) hemF 5322195..5323112 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP34_RS24820 (PCP34_24805) - 5323303..5324280 (+) 978 WP_003097303.1 NADPH:quinone reductase -
  PCP34_RS24825 (PCP34_24810) - 5324290..5324847 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP34_RS24830 (PCP34_24815) dprA 5324888..5325976 (-) 1089 WP_023110564.1 DNA-processing protein DprA Machinery gene
  PCP34_RS24835 (PCP34_24820) tsaP 5326111..5327136 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP34_RS24840 (PCP34_24825) def 5327275..5327781 (+) 507 WP_003107059.1 peptide deformylase -
  PCP34_RS24845 (PCP34_24830) fmt 5327836..5328780 (+) 945 WP_023110565.1 methionyl-tRNA formyltransferase -
  PCP34_RS24850 (PCP34_24835) rsmB 5328777..5330081 (+) 1305 WP_003114643.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP34_RS24855 (PCP34_24840) trkA 5330109..5331482 (+) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  PCP34_RS24860 (PCP34_24845) - 5331631..5331948 (+) 318 WP_003120685.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=703050 PCP34_RS24835 WP_003097294.1 5326111..5327136(-) (tsaP) [Pseudomonas aeruginosa strain 20]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=703050 PCP34_RS24835 WP_003097294.1 5326111..5327136(-) (tsaP) [Pseudomonas aeruginosa strain 20]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393