Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   NI375_RS21495 Genome accession   NZ_CP099957
Coordinates   1342090..1344135 (-) Length   681 a.a.
NCBI ID   WP_064369289.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc15A     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337090..1349135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI375_RS21485 (NI375_21690) ylqF 1339527..1340471 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  NI375_RS21490 (NI375_21695) cqsA 1340809..1341990 (+) 1182 WP_151515634.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NI375_RS21495 (NI375_21700) cqsS 1342090..1344135 (-) 2046 WP_064369289.1 response regulator Regulator
  NI375_RS21500 (NI375_21705) - 1344499..1345116 (+) 618 WP_104976141.1 HAD family phosphatase -
  NI375_RS21505 (NI375_21710) - 1345206..1345754 (-) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  NI375_RS21510 (NI375_21715) - 1346026..1347150 (+) 1125 WP_017821552.1 fatty acid desaturase -
  NI375_RS21515 (NI375_21720) dcuC 1347510..1348877 (+) 1368 WP_005376528.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78229.77 Da        Isoelectric Point: 5.2226

>NTDB_id=702958 NI375_RS21495 WP_064369289.1 1342090..1344135(-) (cqsS) [Vibrio alginolyticus strain Isc15A]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWEFAFPQAYENLPLRLFCSLLFFGIIFRNRLSSTWRDYVPIYYQVTIT
LCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSILPNMKEAGKEQYVMSVEDVTLLREVSQDAMN
IIQSGNETIDLLLTSIDENRVSRSSFKKYSVHSVVEQAIESFSYKRATDRFAISLDARSEFEFLGSDTLLKYVMYNLFKN
AFHHRKSEDFHIHVSMISSERFNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPLTTSDTVNEIKNDLTKLKTILTVTSQDILVSKVTDISRFMGFDSTILDANQVLKKKEYEFEFDLIFIDLE
SLDPRANQLDRLESLLSFTEARIVYLFEHHPTQRARKAAYEPIWIETQAWLLNTKPTIERLLYDSSYVSTPTASVTLDNS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQEDVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=702958 NI375_RS21495 WP_064369289.1 1342090..1344135(-) (cqsS) [Vibrio alginolyticus strain Isc15A]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCAAACCTAACTCTCGTTGGCTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTCTGGGAGTTTGCCTTTCCACAGGCTTATGAAAATTTACCTCTTAGATTGTTTTGCTCGTTATTGT
TTTTCGGCATCATTTTTAGAAACCGCTTATCATCGACTTGGAGAGATTATGTTCCTATTTACTACCAAGTGACGATAACG
CTGTGCTTACCGTTTTTCTTTTTTTATATGTTACTGATGAATGACTGGTCCAATGTATGGGTTATGTCGTTTATGTCTGC
AATTTTCTTACACATTTTACTGGTTCATGTTACTAGGGTCATGTTTGCTCAAACCTTTGCTGGGATAGGTTTAGCAACAT
TCTTCGCTTGGGTTGCAAAAGGGTTCCATCTTGACTTGACCATGGATTGGACTCATGTGCCAATCTTTCTGTTTATTTAT
GTCTTCGGTAATTTGTTCTATTTTCGTAACCAAGTTGAACATGAAGCGAAAGTCTCGCTGGCAAAATCATTCGGGGCAGG
GATTGCACATGAAATGCGTAACCCGTTGAGTGGGCTTTGCACTTCAATAGATGTTATCCAGTCGATCTTGCCCAACATGA
AAGAGGCAGGAAAAGAGCAGTACGTCATGAGTGTAGAGGATGTCACCTTATTACGTGAAGTGAGTCAGGATGCAATGAAC
ATTATCCAATCGGGTAATGAAACCATCGATTTATTGCTAACTTCGATTGATGAAAATCGAGTTTCTCGTTCTAGCTTCAA
AAAATATTCAGTTCACTCGGTCGTTGAACAGGCAATTGAAAGCTTCAGTTATAAACGTGCCACTGATCGATTTGCCATAT
CGCTGGATGCGAGAAGTGAGTTTGAGTTTCTAGGTAGTGATACGTTACTTAAATACGTTATGTATAACCTCTTCAAGAAT
GCCTTCCATCACCGTAAATCTGAAGATTTTCACATACATGTATCCATGATAAGTTCAGAACGCTTTAATCAAATTGTTGT
AACCGATAATGGTGCTGGCATTGCTCCTGATGTTCTACGCAATATCTTTCAAGACTTTTACACCACTGGCAAATCAGGAA
GTTATGGTTTGGGTCTACCGTTTTGTAAAAAAGTCATGCGTTCATTTGGGGGGAACATTGAGTGTCAATCTCAGTTAGGG
GAGTGGTCTCAATTTACATTAACTTTCCCACTAACGACATCTGATACCGTTAATGAAATCAAAAACGATCTGACTAAACT
CAAAACCATTCTAACGGTGACTAGCCAAGATATCTTGGTGTCTAAAGTAACAGATATTAGCCGTTTTATGGGCTTTGACT
CGACGATTTTAGATGCCAACCAAGTACTCAAAAAGAAAGAGTACGAGTTCGAATTCGATCTGATTTTTATCGATCTTGAG
AGCTTAGATCCAAGAGCAAACCAATTGGATAGATTAGAATCTCTCTTGTCTTTCACTGAAGCACGCATCGTTTATCTTTT
TGAGCATCATCCGACTCAGAGAGCACGTAAGGCTGCATATGAACCTATTTGGATCGAAACGCAAGCCTGGTTATTGAATA
CTAAACCAACTATTGAGCGTCTCTTATATGATTCAAGCTATGTATCGACACCAACGGCCTCGGTGACGTTAGATAATTCA
AATAAGCGCACAATTATGGTCGTGGATGATAATGAATCTTTGCGTAAATTCACGGCAATGTTACTTGAAAAGCAAGGCTT
TGAAGTTATTCAGAAAGAAGACGGGCAGCAGGCTCTGGATACACTAGAGCAAGAAGATGTCGATCTCATTCTGATGGATA
TCGAAATGCCCATTATGGATGGTGTAGAAGCGTCTAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCACATACAGGGGATAGTTCACCTGTCACGTTGGACAAAATTGGGTCTTCGGGTATGTCTGACTTCATCGTAAAACC
GGCGGATAAAAATCGCTTGTTCGATAAAATCGCAAACTGGATCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-412)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

50.219

100

0.505